BAC Information

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BAC

Clone NameMSMg01-411I01
Chromosome2 (Build37)
Map Location 61,626,225 - 61,626,409
singlet/doubletsinglet
Overlap genePsmd14
Upstream geneRbms1, ENSMUSG00000075325, Tank
Downstream geneTbr1, LOC100039274, Slc4a10, Dpp4, Gcg, Fap, Ifih1, Gca, Kcnh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411I01.T7 (MSMg01no411_i01.b1)MSMg01-411I01.TJ (MSMg01no411_i01.g1)
ACCAG508497AG508498
length745822
length of high quality
(start - end)
196 (50 - 245)422 (155 - 576)
definitionCHROMAT_FILE: MSMg01no411_i01.b1 PHD_FILE: MSMg01no411_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:34 2005CHROMAT_FILE: MSMg01no411_i01.g1 PHD_FILE: MSMg01no411_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGTGTGTATCGCAATCTATTACATTATATTCAAATAATGT
TGATTTGGCCAATTTTCCTCAATATTTATATCTTCTTTTGTTTTTCTATC
TAATTACATGAACACAAAAATTTCTACCTAGTAAATATAATATAGAAAAA
CCAAAAATATTTATCATTTATATAAAATATAAAAAGATCTCATNTNNTTT
CANNNGGTTAANTTAAGTTAGTCTAATATATCATGATCAAGCCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTN
GTATGAGGAGGNNAGAGGNNNAGNNNGAGNAGAGGGAGGAGTNAGNAGAG
GGGTGGTTNNNNNNNNNTGTTTGCCAATNCCCCATGATAXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCAT
TCTTCTACATGATAACCACCAGTTGTGCCAGTACCATTTGTTGAAAATGC
TGTCTTTTTTCCACTGGATGGTCTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGTCCTTCTATTCTATTCTATTGGCC
CACTTGCCCGTTGGCATCCCATTTTTATCTGCTCTGTATTAATGTTCTAT
GTCCGGCATGTTGATTCCCTCAGAGGTTCTTTTTTTCCTCGACAACAATT
TTCGGTATCTTACGCCTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_i01.b1 MSMg01no411_i01.b1 CHROMAT_FILE:
MSMg01no411_i01.b1 PHD_FILE: MSMg01no411_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:34 2005
         (196 letters)



>mm_chr2_61626058_61626652
          Length = 595

 Score =  333 bits (172), Expect = 5e-96
 Identities = 184/190 (96%), Gaps = 5/190 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtgtgtatcgcaatctattacattatattcaaataatgttgatttggccaat 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaattcctgtgtg-attgcaatctattacattatattcaaataatgttgatttggccaat 294

                                                                       
Query: 65  tttcctcaatatttatatcttcttttgtttttctatctaattacatgaacacaaaaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tttcctcaatatttatatcttcttttgtttttctatctaattacatgaacacaaaaattt 234

                                                                       
Query: 125 ctacctagtaaatataatatagaaaaaccaaaaatatttatcatttatataaaatataaa 184
           ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 233 ctacctagtaaatataatatagaaaaaccaaaaa----tatcatttatataaaatataaa 178

                     
Query: 185 aagatctcat 194
           ||||||||||
Sbjct: 177 aagatctcat 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 595
Length adjustment: 8
Effective length of query: 188
Effective length of database: 587
Effective search space:   110356
Effective search space used:   110356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)