BAC Information

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BAC

Clone NameMSMg01-411I16
Chromosome2 (Build37)
Map Location 11,484,111 - 11,484,522
singlet/doubletsinglet
Overlap genenone
Upstream geneSfmbt2, LOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3
Downstream geneRbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411I16.T7 (MSMg01no411_i16.b1)MSMg01-411I16.TJ (MSMg01no411_i16.g1)
ACCAG508527AG508528
length767781
length of high quality
(start - end)
247 (73 - 319)414 (76 - 489)
definitionCHROMAT_FILE: MSMg01no411_i16.b1 PHD_FILE: MSMg01no411_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:37 2005CHROMAT_FILE: MSMg01no411_i16.g1 PHD_FILE: MSMg01no411_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXATTACAAAGAGGATCCG
CGGAATTCTTTGTTTCGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTC
CCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGC
CTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTT
TATGAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTG
TTCTATTCAGGAATTTTCCTCCTGTACCCCTATCTTCGAGGCTTTTCCCT
ACTTTCTCTTCTATAAGTTTCAGTGTCTCTGGTTTTATGCGGAGCTCCTT
ACTCCTCTTAGACCCGCCCTTACATCTCGAATCCTATTCGCTTCCTTTTG
TCCTCTTTTTACTGCCATCTGCCCGTTGTGCCTAGCTCTTTTTGCCTTAT
CCGCCGTCTTCCTTCCTTTGTTTCCGTTCACTCCCCCTCGTCTTTCCCCT
TTTACCCTTTCTCCTTCCTTCCTCTCTTCCTTGCTTCCTTCTCTCTCTTC
TTTTTTTCCTTTTTTTTCCTCTTTTTCCTCCTCCCCCTTTTCCTCGTCTT
CCTCTTTTTTTTTCTTTTCCCCCTATTCTCTTTCTTTCTTTTTTTCTCTC
TTCTCCCCGTTTCTCCCTTATCTCCCTCCTTTTTTCCTCCGTCCATTTTC
CCTTCCTTTATTTTCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATCCCAGCTCCCAGCGGCCCTTGG
GTGTTTTACAAGCCAGCCTCTGCTAGCAGGTGTCTTGTTACTTTCTTCAA
GGACACACCAAAAGTTTTTAAACACAGCCAGTTATCTTTGTTGGCCAGTT
CTAATTGGTAGCAAAAAAACAAATGTTTCTAGGATCATTCATCAACGACC
AAAATCTGAGGGGTGCTCTCTGTTATTTGAACATGGAATGGAACAAAGCA
GCCAGCTGCAGAATTCTTTATGTTCCCAGTTAAACAAACAACTTAGAGAG
ATCAGAATACATCAGTCCAGCTTGTTTCATTCATAACTCTTCTGGTGCTA
ATTGTGTGGGGTCTCCTCGATCCAACAAAACTCAGTCTTCAACTCTCCAG
ATGCCAGCTGGACACCCTACAATCCCATTTGTTTCTGATGCTACCCAAAG
AAATTGTCATAAGTCACACGTCCGAACATCCTAGATAAACGTTACGAACA
GGCTTTTGCCCTCCACTTTATTTCCCCCCCCCTCTTTCTCTCCTTTCTTC
CCCTCCTCCTTTTTCCCCCCCCTTCTCCCTCCATCCATTCACCATTTCAT
TTTTTTTCCCATTCTCTCCCCTTTCCCTTTTCCTCTCCCCTCTTCCCCCT
TTTCTTTTTTCATTTTACCCGTTTCCCCTTTTTCCCCCTTTTTACTTTTC
TTTATACTTATCCTCCCCTTTCATTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_i16.g1 MSMg01no411_i16.g1 CHROMAT_FILE:
MSMg01no411_i16.g1 PHD_FILE: MSMg01no411_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:38 2005
         (414 letters)



>mm_chr2_11483911_11484724
          Length = 814

 Score =  716 bits (370), Expect = 0.0
 Identities = 402/414 (97%), Gaps = 4/414 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcccagctcccagcggcccttgggtgttttacaagccagcctctgctagcaggtgtct 60
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 612 catcccagcacccagcggcccttgggtgttttacaagccagcttctgctagcaggtgtct 553

                                                                       
Query: 61  tgttactttcttcaaggacacaccaaaagtttttaaacacagccagttatctttgttggc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 552 tgttactttcttcaaggacacaccaaaagtttttaaacacagacagttatctttgttggc 493

                                                                       
Query: 121 cagttctaattggtagcaaaaaaa--caaatgtttctaggatcattcatcaacgaccaaa 178
           ||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||||||
Sbjct: 492 cagttctaattggtagcaaaaaaaaccaagtgtttctaggatcattcatcaacaaccaaa 433

                                                                       
Query: 179 atctgaggggtgctctctgttatttgaacatggaatggaacaaagcagccagctgcagaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atctgaggggtgctctctgttatttgaacatggaatggaacaaagcagccagctgcagaa 373

                                                                       
Query: 239 ttctttatgttcccagttaaacaaacaacttagagagatcagaatacatcagtccagctt 298
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttctttatgtccccagttaaacaaacaacttagagagatcagaatacatcagtccagctt 313

                                                                       
Query: 299 gtttcattcataactcttctggtgctaattgtgtggggtctcctcgatccaacaaaactc 358
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||
Sbjct: 312 gtttcattcataactcttctggtgctaattgtgtggggtttcctcgatccaacaa--ctc 255

                                                                 
Query: 359 agtcttcaactctccagatgccagctggacaccctacaatcccatttgtttctg 412
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 254 agtcttcaactctccagatgccagctggacaccctacaatcccattagtttctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)