Query= MSMg01no411_j05.b1 MSMg01no411_j05.b1 CHROMAT_FILE:
MSMg01no411_j05.b1 PHD_FILE: MSMg01no411_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:40 2005
(470 letters)
>mm_chr2_164306789_164307656
Length = 868
Score = 781 bits (404), Expect = 0.0
Identities = 447/470 (95%), Gaps = 18/470 (3%)
Strand = Plus / Minus
Query: 5 gaattccattattatcttgactctcttctgtttattttctgagagagttctgcaatacag 64
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaattccattaggattttgactctcttctgtttattttctgagagagttctgcaatacag 411
Query: 65 tcctagctgccccagaatttgtggcaatcctcctgcctctgtcccccccccccttttggc 124
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 410 tcctagctgccccagaatttgtggcaatcctcctgcctctg--ccccccccccttttggc 353
Query: 125 atgtaggcatggacaacataccctgctgtgtcctcagctctcaagctctgttctgaacat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atgtaggcatggacaacataccctgctgtgtcctcagctctcaagctctgttctgaacat 293
Query: 185 cccacctctgcatattcatttgcagattaatttttttcaacctgtgtctgcccatggaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cccacctctgcatattcatttgcagattaatttttttcaacctgtgtctgcccatggaat 233
Query: 245 tttgaagttcaggagccttttcttgctgttaaaaaaaaaaatatatatatatatatattt 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 232 tttgaagttcaggagccttttcttgctgtt------aaaaatatatatatatatata--- 182
Query: 305 ttttttaag----atttatttattatatgtaagtacactgtagctgttttcagacacacc 360
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 --ttttaagatttatttatttattatatgtaagtacactgtagctgttttcagacacacc 124
Query: 361 agaagagggcgtcagatctcattacggatggttgtgagccaccatgtggttgctgggatt 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 agaaaagggcgtcagatctcattacggatggttgtgagccaccatgtggttgctgggatt 64
Query: 421 tgaactccggacctttggaagagcagtcgggtgctcttacccactgagcc 470
||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 63 tgaactccggacctttggaagagcagttggg-gctcttacccactgagcc 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 868
Length adjustment: 10
Effective length of query: 460
Effective length of database: 858
Effective search space: 394680
Effective search space used: 394680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_j05.g1 MSMg01no411_j05.g1 CHROMAT_FILE:
MSMg01no411_j05.g1 PHD_FILE: MSMg01no411_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:40 2005
(472 letters)
>mm_chr2_164146126_164146997
Length = 872
Score = 814 bits (421), Expect = 0.0
Identities = 460/473 (97%), Gaps = 2/473 (0%)
Strand = Plus / Plus
Query: 1 ttctgctgtgcccatgtgctgtgccctttcccttctgggtcagct-tgtcctctctgact 59
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 ttctgctgtgcccatgtgctgtgccctttcccttctgggtcagctat-tcctctctgact 259
Query: 60 tgacattttgacattcttaaggtgtttctacttccatatttagtgcttgtttacatgccc 119
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 260 tgacattttgacattctttaggtgtttctacttccatatttagtgcttgtttgcatgccc 319
Query: 120 acacactaattcagacctttctgtttacaaaaatgtgtgaaatccactcattatataata 179
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 320 acacactaattcagacctttctgtttacaaaaatgtttgaaatccactcattatataatt 379
Query: 180 ctggaatatgacaagcttattatatggaaggtaatggtagctctaaaaatgaaagtaaaa 239
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 380 ctggaatatgacaagcttattatatggaagataatggtagctctgcaaatgaaagtaaaa 439
Query: 240 aatatcccaaaccaacagtatgtcatatgtgaagatagtagtacatcatgagccaataga 299
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 aatttcccaaaccaacactatgtcatatgtgaagatagtaatacatcatgagccaataga 499
Query: 300 ggtttgtttcaaattaatctaaatgggttatttttaattagtattttaattattaaattt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggtttgtttcaaattaatctaaatgggttatttttaattagtattttaattattaaattt 559
Query: 360 acatgtttgtgtatgtgaattttgagtacataattttacctccgagtattactagatgtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acatgtttgtgtatgtgaattttgagtacataattttacctccgagtattactagatgtt 619
Query: 420 aaccatgagaggtcttagcatgacgatctgagtgcaaggtagattggtaacca 472
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaccatgagtggtcttagcatgacgatctgagtgcaaggtagattggtaacca 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
