BAC Information

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BAC

Clone NameMSMg01-411K08
Chromosome2 (Build37)
Map Location 179,323,922 - 179,524,843
singlet/doubletdoublet
Overlap geneCdh4
Upstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413
Downstream geneTaf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411K08.T7 (MSMg01no411_k08.b1)MSMg01-411K08.TJ (MSMg01no411_k08.g1)
ACCAG508607AG508608
length761743
length of high quality
(start - end)
243 (75 - 317)176 (56 - 231)
definitionCHROMAT_FILE: MSMg01no411_k08.b1 PHD_FILE: MSMg01no411_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:46 2005CHROMAT_FILE: MSMg01no411_k08.g1 PHD_FILE: MSMg01no411_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,524,601 - 179,524,843)(179,323,922 - 179,324,097)
sequence
AAATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGACGATCCG
CGGAATTCTGGGTTCCCTCACCCTGGGTACTGAAGACAGTGGACTGTGGG
TCCCATCACTTAGACACTGCAGACAGTGTGGTGTGTGACTCTCACTATCC
TGGACACTGCAGACAGTGTAGGCTGTGGGTCCCATCACTTGGACACTGCA
GATAGCTTGTGTGAGTCTCACTATCTTGGGCACTACAGGCTACTGTAAGC
ATCCTTGACCTTCATCCAAATGACACCAGGCACACCTCCCACCCACAACA
TCCAAAATGGTTTTAAACTCCATTCTTTTGCCCTGGATGAGAACAAAGTA
CTCCAGAGACTGTGTATACAGGTCTACACTGCTGTAGGCTGGACAAGGGG
CAGGATAGCTACATCTGGGCAGATTTGTGACACAGTGACATTGCTCTGAG
GTCTATGGTAATGGTAGGAGTTGTCATGGTGACTGTGTCCTATCGCCCAG
TGTCCTATGATGCTTTCCATCTGTGACCTGTCACATGTACCCTGGTCATG
TTGCTTTGGATATCTGACAGCCCTGCCTTCCCCTGCTTCACTGTCTACTT
CATTTACTCTCTCTTGCTCCCCCCCCAATTTCCTCTCTATCTCCCTCCTC
GGTATTCTCACTTTGTTTCTCCTCATTTGATTTTCTTTTCTCCTCGCGTC
TTCCTCCGTACTTTCAACCCCATTCTCCCCCCTCCTATTTCCATTTCCTC
TTTCTTCTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCAGA
CAGAAATTCTCTTAAACGCAAACAAGCCCACGTTTACGGTATCCACCTGA
AGCGGAGGCGTAGATGAGGACAGGAAGTTTGAAACCAGCTTCTGTGTTGC
CATGGCAAGGCCTTTGGGTGACAGAATTGTCATGATCACCTGCTGTGACA
TTGTCATCGTCCTTTATTCTATTTATCTGGGAAGTTAGCAACATCTCCAG
CTAATTTCTCTGCCCACCGTAGTGTCATGCCCCCCTGTGTGGAGCAAATG
TTTCTGTTTGTCTTATCCTTCCTCAGTAACTCTGCTAAAGGTGACATCTG
CACACAGTTATCCAGGTATGCCTCCAGACACAGAACATCTGAGCATGTCA
GTCCCTCAAACAGATGGAACCTGGCGATGACTGTTGTTTGATAGCGATGC
TCCCAGCGACTATAGTCCCCCTGCCTATAACTATTGATCATCATGTTCCA
TGCTTCCTATCGTAACTACTCTGCTAACGTTTCCACCCCTCTTTCTTTCC
CTTCCCCTCTTTCACCTTTCTTCCACTCCCCCTTTTTCCCCCCCTTTACC
CCCCTCTTATCCCTTTTCTTTTTTTTTCCCCCCCCCTCCTCTTCCTTTTC
TTCCCCACCCTCCCCCCTCTTCCTTTTTCTTTTTCCCTTTCCCCATTATC
ACCCTTTCTCTTTATTCTACACCTCCCTCCCCTATTCCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_k08.b1 MSMg01no411_k08.b1 CHROMAT_FILE:
MSMg01no411_k08.b1 PHD_FILE: MSMg01no411_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:46 2005
         (243 letters)



>mm_chr2_179524401_179525043
          Length = 643

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggtactgaagacagtggactgtgggtcccatcacttagacactgcagacagtgtggtgt 60
           |||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||| 
Sbjct: 443 gggtactgaagacagtgggctgtggatcccatcacttggacactgcagacagtgtggtgg 384

                                                                       
Query: 61  gtgactctcactatcctggacactgcagacagtgtaggctgtgggtcccatcacttggac 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 383 gtgactctcactatcctggacactgcagacagtgtgggctgtgggtcccatcacttggac 324

                                                                       
Query: 121 actgcagatagcttgtgtgagtctcactatcttgggcactacaggctactgtaagcatcc 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 actgcagacagcttgtgtgagtctcactatcttgggcactacaggctactgtaagcatcc 264

                                                                       
Query: 181 ttgaccttcatccaaatgacaccaggcacacctcccacccacaacatccaaaatggtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgaccttcatccaaatgacaccaggcacacctcccacccacaacatccaaaatggtttt 204

              
Query: 241 aaa 243
           |||
Sbjct: 203 aaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no411_k08.g1 MSMg01no411_k08.g1 CHROMAT_FILE:
MSMg01no411_k08.g1 PHD_FILE: MSMg01no411_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:46 2005
         (176 letters)



>mm_chr2_179323722_179324297
          Length = 576

 Score =  333 bits (172), Expect = 5e-96
 Identities = 175/176 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcttaaacgcaaacaagcccacgtttacggtatccacctgaagcggaggcgtagat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 attctcttaaacgcaaacaagcccacgtttacggtatccacctgaagcggaggcgtcgat 260

                                                                       
Query: 61  gaggacaggaagtttgaaaccagcttctgtgttgccatggcaaggcctttgggtgacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggacaggaagtttgaaaccagcttctgtgttgccatggcaaggcctttgggtgacaga 320

                                                                   
Query: 121 attgtcatgatcacctgctgtgacattgtcatcgtcctttattctatttatctggg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgtcatgatcacctgctgtgacattgtcatcgtcctttattctatttatctggg 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)