BAC Information

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BAC

Clone NameMSMg01-411K13
Chromosome2 (Build37)
Map Location 116,531,516 - 116,531,974
singlet/doubletsinglet
Overlap genenone
Upstream geneBC052040, Mrg1, G630016G05Rik, 2810405F15Rik, LOC433464
Downstream geneTmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411K13.T7 (MSMg01no411_k13.b1)MSMg01-411K13.TJ (MSMg01no411_k13.g1)
ACCAG508617AG508618
length747748
length of high quality
(start - end)
462 (74 - 535)240 (78 - 317)
definitionCHROMAT_FILE: MSMg01no411_k13.b1 PHD_FILE: MSMg01no411_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:47 2005CHROMAT_FILE: MSMg01no411_k13.g1 PHD_FILE: MSMg01no411_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXATACGAAAGAGGATCCGC
GGAATTCTTATTTAACAAAAAGCCAACTAAATGAGCACTCACATCTGTAA
GCCATAGAGAAGAGTGAACCCATAATGCTTTATGTATGTAGTGAGACCTG
AGGTTGGAGGCATGCCGAGAATTTTAGAGACTTTGAAAGGAATCTTGTTT
TACAAAGATAGTAAGGACTTCACAATTTGATTGGAGAGCATGGTCTTCAG
TCTTAGTTTTGAGGAATACCTGGAAGTTTAGCAGGTGATTAAAAGTAATA
CATTTGGAATATAATATTATTATTGAAGGTTCTTAGAAAATAATTTTTTC
TGATAATTTACTTTCTTTCATAAAGAAAGAACCATCCTTTGTTTGTTACT
GAGAAACTTTGCTTTTTACCTTTAAATAACATTAAAAAAAAAACAAACAA
ACACCCAACTCAAAGCCTGAGGTGAGCATGGAGCAGATGGTTGAGTTTAT
CCAGAGACCATAGTTGTGTTAGAAAAATAATTAGAGTAACATCACATACT
CAAATTGGTGAATACTCAAAATAACCTGCGCACCTTCATCATTTTAAACC
ATGCACTTTGGATAAGTTTTGCTTTACCAGGTCAGAACAAATGATGTATA
TTTCCTAGCTGTACTTTTTCCAACCGTCATCCTGATACTAACGTACTGTA
TCCCATGCCTAAACATTAAAATTGTATCTTTTGTATACCTTCCCATC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCCTAGCCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGACCT
CACACAATATGTACTCACTGATAAGTGGCTATTAGCCCAGAAACTTAGGA
TACCCAAGATATAAGATACAATTTGCTAAAAGCATGAAACTCAAAAAGAA
AGAAGGCCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAA
CACCCTTGGAAGGAGTTTCTGATTCAAAGTTTGGAGCTGAGACAAAAGGA
TGGACCTCCTAGAGACTGCCATATCCAGGGATCAATCCCATAATCAGCCT
CCAAACGCTTACACCATTGCATACACTAGCAAGCGTTTGCTGAAAGGACC
CTGATATAGCTGTCTCCTGTGAGACTATGCTGGGGCCTAGCAAACACATA
AGTGTATGCTCACAGCCAGCTATTGGATGGATCATAGGGCCCCTCCTCTA
GGAGCTAGAGAAAGTACCCAATGAGCTAAAGGGATCTGTTACTCTATAGG
TGCAACAACATTATGAATTAACCATTACGCCGGAGCTCCTGACCCTATTT
GTATATGTACCAAAATATGGCCTTAATTGGCCTTGACTGTGCAGAAAGGC
TAATTGGATTTGTCCTACCTTATTTGCCTCTTTATCACGGGCAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_k13.b1 MSMg01no411_k13.b1 CHROMAT_FILE:
MSMg01no411_k13.b1 PHD_FILE: MSMg01no411_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:47 2005
         (462 letters)



>mm_chr2_116531316_116532174
          Length = 859

 Score =  855 bits (442), Expect = 0.0
 Identities = 456/462 (98%), Gaps = 3/462 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caactaaatgagcactcacatctgtaagccatagagaagagtgaacccataatgctttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 caactaaatgagcactcacatctgtaagccatagagaagagtgaacccataatgctttat 600

                                                                       
Query: 61  gtatgtagtgagacctgaggttggaggcatgccgagaattttagagactttgaaaggaat 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 599 gtatgtagtgagacctgaggttggaggcatgccgagaattttagggactttgaaaggaat 540

                                                                       
Query: 121 cttgttttacaaagatagtaaggacttcacaatttgattggagagcatggtcttcagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cttgttttacaaagatagtaaggacttcacaatttgattggagagcatggtcttcagtct 480

                                                                       
Query: 181 tagttttgaggaatacctggaagtttagcaggtgattaaaagtaatacatttggaatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tagttttgaggaatacctggaagtttagcaggtgattaaaagtaatacatttggaatata 420

                                                                       
Query: 241 atattattattgaaggttcttagaaaataattttttctgataatttactttctttcataa 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ataatattattgaaggttcttagaaaataattttttctgataatttactttctttcataa 360

                                                                       
Query: 301 agaaagaaccatcctttgtttgttactgagaaactttgctttttacctttaaataacatt 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 359 agaaagaaccatcctttgtttgttactaagaaactttgctttttacctttaaataacatt 300

                                                                       
Query: 361 aaaaaaaaaacaaacaaacacccaactcaaagcctgaggtgagcatggagcagatggttg 420
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aaaaaaaaaaca---aaacacccaactcaaagcctgaggtgagcatggagcagatggttg 243

                                                     
Query: 421 agtttatccagagaccatagttgtgttagaaaaataattaga 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agtttatccagagaccatagttgtgttagaaaaataattaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 859
Length adjustment: 10
Effective length of query: 452
Effective length of database: 849
Effective search space:   383748
Effective search space used:   383748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)