Query= MSMg01no411_m16.b1 MSMg01no411_m16.b1 CHROMAT_FILE:
MSMg01no411_m16.b1 PHD_FILE: MSMg01no411_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:58 2005
(558 letters)
>mm_chr2_111094428_111095385
Length = 958
Score = 1064 bits (550), Expect = 0.0
Identities = 556/558 (99%)
Strand = Plus / Plus
Query: 1 actaagaactattaggactccagtatcacctggccactgaggcctgaattttggactgtg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 actaagaactattaggactccagtatcacctggccactgaggcctggattttggactgtg 260
Query: 61 gtgtactaacttcactgttccaagagtactcacaggaactaacaaagaaaaagttaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtactaacttcactgttccaagagtactcacaggaactaacaaagaaaaagttaaaag 320
Query: 121 ttcaatagtgttgctaacatacttttccttcttctttttttctgatcaggtaagacagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaatagtgttgctaacatacttttccttcttctttttttctgatcaggtaagacagaa 380
Query: 181 gagtaagacataatatagtactatgtattaatgatattaataagtatattaaataaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtaagacataatatagtactatgtattaatgatattaataagtatattaaataaagat 440
Query: 241 ttactctgcttttacaaaccatattgttgggtcagaaggatctgcttagtctgtcatgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttactctgcttttacaaaccatattgttgggtcagaaggatctgcttagtctgtcatgtt 500
Query: 301 aatcttgagattttacagagtgtttcagtttccattagaggcattgtcttatatgtctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcttgagattttacagagtgtttcagtttccattagaggcattgtcttatatgtctca 560
Query: 361 caaaacaagctagtaacccaattttactttttagaaatccttagttatatacttgctgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaacaagctagtaacccaattttactttttagaaatccttagttatatacttgctgga 620
Query: 421 gggaaaaatatgtaggatagtagaatgagtatcaacatatttaactttagcaagaatgca 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 gggaaaaatatgtaggatagtagaatgagtatcaacatgtttaactttagcaagaatgca 680
Query: 481 agaacacaaatgttccttatacaagtacacatttagatgtgttaactatacttcagtgcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaacacaaatgttccttatacaagtacacatttagatgtgttaactatacttcagtgcc 740
Query: 541 ttaaagcctccatacata 558
||||||||||||||||||
Sbjct: 741 ttaaagcctccatacata 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_m16.g1 MSMg01no411_m16.g1 CHROMAT_FILE:
MSMg01no411_m16.g1 PHD_FILE: MSMg01no411_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:58 2005
(551 letters)
>mm_chr2_111308240_111309189
Length = 950
Score = 1019 bits (527), Expect = 0.0
Identities = 545/551 (98%), Gaps = 1/551 (0%)
Strand = Plus / Minus
Query: 1 aatttaccagtgtccagaaggtgaagcctccctaaagtacagttacaggtgcagacattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aatttaccagtgtccagaaggtgaagcctccctaaagtacagttacaggtgcagacattt 691
Query: 61 cattaatttctgtagtgaaaagttcagacataacaggtcttcacgcaggcagtgaaacac 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 690 cattaatttctgtagtgaaaagttcagac-taacaggtcttcacgcaggcagtgaaacac 632
Query: 121 gtaggcccactctgcaggcaggagtccatgttttcatctgagaatagaacaggaagctaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ataggcccactctgcaggcaggagtccatgttttcatctgagaatagaacaggaagctaa 572
Query: 181 taaccccgagccagaggtcagtagatggatcaacatctggagtcactatttgatgtcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 taaccccgagccagaggtcagtagatggatcaacatctggagtcactatttgatgtcttg 512
Query: 241 aaattaaggaagataattctgaagcacatttttccagtgcagtgtttggtgtttcagaga 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 511 aaattaaggaagataattctgaagcacatttttccagtgtagtgtttggtgtttcagaga 452
Query: 301 agaagaaaggttgaatacaagtcctatgatgaacagatttcattgctgattctttaccac 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 451 agaagaaaggttgaatacaagtcctatgctgaacagatttcattgctgattctttaccac 392
Query: 361 attacaatgaacttaggagattcccccaagatagaatggttagcccttccaaacaggcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attacaatgaacttaggagattcccccaagatagaatggttagcccttccaaacaggcaa 332
Query: 421 ttgtgggattttgaaaagatctagctcacataatataaagttaaatgtcgccactagaga 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttgggggattttgaaaagatctagctcacataatataaagttaaatgtcgccactagaga 272
Query: 481 ggggtacctgtaaagaaagaaagctacttaagtgaagaagactcgcccccactgtagcta 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 271 ggggtacctgtaaagaaagaaagctacttaagtgaagaagacttgcccccactgtagcta 212
Query: 541 tagctaccatt 551
|||||||||||
Sbjct: 211 tagctaccatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 950
Length adjustment: 10
Effective length of query: 541
Effective length of database: 940
Effective search space: 508540
Effective search space used: 508540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
