BAC Information

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BAC

Clone NameMSMg01-412F08
Chromosome2 (Build37)
Map Location 178,133,856 - 178,134,383
singlet/doubletsinglet
Overlap geneSycp2
Upstream geneLOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3
Downstream genePpp1r3d, 9030418K01Rik, Cdh26, LOC100039368, LOC665264, LOC100043168, LOC100039413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412F08.T7 (MSMg01no412_f08.b1)MSMg01-412F08.TJ (MSMg01no412_f08.g1)
ACCAG509131AG509132
length755807
length of high quality
(start - end)		532 (51 - 582)161 (82 - 242)
definitionCHROMAT_FILE: MSMg01no412_f08.b1 PHD_FILE: MSMg01no412_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:40 2005CHROMAT_FILE: MSMg01no412_f08.g1 PHD_FILE: MSMg01no412_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGCTGTATTCCTTCTGTAAAACATATATGAACAGATAAAG
ATATATTTATTGTGTGTTAGGTGATATGATAGTAAATACTATTTAAGATG
GGAATAAAAGAACTGCATTTCACATTACCTTTACCACAGTAAGTAAACTG
ATTATCTGGTAAACCACTGCCACTAAAGTCATTCTACTTTGTGAACTTAA
TGGTTATTCAACAAATCTGGCATTTCGGAAAAACATGTTTTCTATGTTTC
TGACATAGTGAGTTCTAGAAAATAGCTATCATGCATATTGGACACATGCC
TCTAATCCCAGCTCTCAGTAGGTGGCAACAAAAGGATCAGGAAATCAAGG
CTTCTCAGCTTCATACTAAGGAGTGGCCTGGGGTATACGAGATCCTGTCT
CAAAGGAGAAAATAATGAAGATCTCCATTCCTCCACAAATATGCAGATAG
CATTATGTTTTTTTCCAAGCTCCAGTTTGAGCTCCTGTAATATTTTGAGC
CAGTGATTTTAGTACAAAGGAAACTGCTACATTAAAAATCATTTTTGTTG
TGTAGTTAAGGAGTTTCCACATCATTTTCAGTGGGAAGTATTACTATTAG
GTAATGATATTCTGAAGAGCAGAAATAAGCACCAAATATTTTAGAAGGGT
TGAGAAATTTTAAAAAGATGAAAACAAACCAACTACCCCTTTAAAAATGG
GGAAA

NNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCCCAACAGAGGTGCC
TTGTCTGGCCTCAGTGGGAGAGGATGTGCCTAGACCTGCAGAGAATGTGC
CAGGGTGGGCAGATACCCAAGGTGGGGGAACTCCACTCTCTCAAAGAAGG
GACAGGGGGTGGAGGGAAGAATTGTGTGAGGGGGATAGGGGNNNNNNNNN
GNTNNTATTTNNNGTGGNTTNNTNNTNNGTTGTGTGGGGTTGGTGTTTTG
GGGGGGTGATGGNGGGGTGTTGTTTTTTTTTTTTTGTGTNTGTTGGTGTT
GTGGNNGGTTGGNTGGTTTTTTGTCTGGTTTTTGGTGGGGNGTGGGTTTT
TTTTGTGTTGTTTTTTGGGTTTTTTTGGTTTTTTTTGTTTTTGTTGTTTT
TGGTGTTGTTTGTTTGGGGGTTGTTTTTGTTTTTTGTTTGTTTTTGGGTG
TTTTTTTGGTTTTTTTGTTTTTTTTTTTTTTTTTTTGTTTGGTTTTTGTG
GTTTTTTTTTGTGTTTTTTTTTTCTGTTTTTTTTTTTTTGTTTTGTTGTG
GTTGGTTTTTTGTTTTTTTGTTTGTTGTTTTTTTTTGTTTGTTTTGTGTT
TTTTTTTTCGTTTTTTTTTGTTTTGTTTTTTTTGTGTGTTTTTGTGTGTT
GGTTTTTTGTTTTTGGGGTTTGTTTTTTTTTTTTTTTTTTTTTTTTGGTT
TTGTTTTTTTTTTTGNTGTTTGTGNTTTTTTTTTGTGTTGNGTTTTTTTG
GTTTTNG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_f08.b1 MSMg01no412_f08.b1 CHROMAT_FILE:
MSMg01no412_f08.b1 PHD_FILE: MSMg01no412_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:40 2005
         (532 letters)



>mm_chr2_178133652_178134583
          Length = 932

 Score = 1013 bits (524), Expect = 0.0
 Identities = 527/528 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctgtattccttctgtaaaacatatatgaacagataaagatatatttattgtg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctgtattcattctgtaaaacatatatgaacagataaagatatatttattgtg 264

                                                                       
Query: 65  tgttaggtgatatgatagtaaatactatttaagatgggaataaaagaactgcatttcaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttaggtgatatgatagtaaatactatttaagatgggaataaaagaactgcatttcaca 324

                                                                       
Query: 125 ttacctttaccacagtaagtaaactgattatctggtaaaccactgccactaaagtcattc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttacctttaccacagtaagtaaactgattatctggtaaaccactgccactaaagtcattc 384

                                                                       
Query: 185 tactttgtgaacttaatggttattcaacaaatctggcatttcggaaaaacatgttttcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactttgtgaacttaatggttattcaacaaatctggcatttcggaaaaacatgttttcta 444

                                                                       
Query: 245 tgtttctgacatagtgagttctagaaaatagctatcatgcatattggacacatgcctcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtttctgacatagtgagttctagaaaatagctatcatgcatattggacacatgcctcta 504

                                                                       
Query: 305 atcccagctctcagtaggtggcaacaaaaggatcaggaaatcaaggcttctcagcttcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcccagctctcagtaggtggcaacaaaaggatcaggaaatcaaggcttctcagcttcat 564

                                                                       
Query: 365 actaaggagtggcctggggtatacgagatcctgtctcaaaggagaaaataatgaagatct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actaaggagtggcctggggtatacgagatcctgtctcaaaggagaaaataatgaagatct 624

                                                                       
Query: 425 ccattcctccacaaatatgcagatagcattatgtttttttccaagctccagtttgagctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccattcctccacaaatatgcagatagcattatgtttttttccaagctccagtttgagctc 684

                                                           
Query: 485 ctgtaatattttgagccagtgattttagtacaaaggaaactgctacat 532
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgtaatattttgagccagtgattttagtacaaaggaaactgctacat 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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