CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTAAGAGGATTATACATCTTAAGGGTTGGACTTCCATCTTCTTACTAT
GGAAAGCTTAGGAAGAGAGAGGTCCTGTTCCCTCTTGGTTTGCAGAGTGC
TTGTCATAGCAAATCACCTTCTTTTATTACACTGTATAATGGGTAGGACT
AGTCTCATTCTTCTTTTATTACACTGTATAATGGGTAGGACTAGTCTCAT
TCAACACTAATGTGGATTTATCTAACAGTGTGGGAAGTCCATAATATGCC
AAGCATTCTGTTCTAATCACCATGTAGATGACCCTATTATGCAAATGAGA
AAATTGAAACCCAGAAAGCTTTCACATATTCTGAAAGTGTCACAGAAAGA
CATGATCTTTTACAGACAAGAGGTATGATTTTTTTCTTGATATTTTTAGG
TTTGAGTCATATTTTCTGAATTATTTTCTATATTTACCTAACATGGAGTG
TGTGTTGGTTTGAATGAAAATGCCCAATAGACTCATAGGGAGTGGCACTA
TTAGGAGGTGTGGCCTTCTGGGAGTAGGTGTGGCCTTTTGGGAGTGTGCG
TGCTTTCTTGGTTTCAACTTCTCCCCGTTTTTTCTTTTCGCTTTTCCCAT
CCTTTATCTTTTTCCAACTTCCACTCTCTTTCCTGTCTCTTTACTCCACC
TATAACTTCTTCCACCTCCTTCTTCCCCATTTTATTCCGCCTACCCTCC

NACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATCTGTTCTTGCTGTAAATAGAAT
GGTTGGTTTTTGAGGCAATCAAAGAGAGTTTTTAAAGTCTCTCTCTCTCT
CATGTGTGTGTGTGTATCTATATGTGAAAGATAAGGTGTATTTAGTAGGT
ATCACATTTTGGAGAGAGTAATAAAACTCCTTTAAGAAGTGTGTTTGACA
CTTGCGATAAAGAAATCCCAATGATTTGTGACTTAAGATTAAAAGTCCTT
TATAGTTCAAAATGCACTATTTTTTATAATATATAAATATTGTTAGACTT
GTATGTATTTTATCTTGGTGTTTGCTAAATAGATAGCATTTATTCAAAGC
AGGTAAGATACTATGAAAACACAGGGACGGGCTTCCAGGTTTATAATTAA
CTTGAGTAAATGACAAATACAACCATATCTATTTAATGAATGACCCTTAT
ATTATAAATGCCTGATATCTTTGGGCCACACCTTTTGATAGGCCAAATTT
CTTTTCCAAAGATTTGTCTTTATTTATTTTGTGTGGGGGGGTATTGTTTT
CTCCTTCCTTCCCTTTCCCATCCTTATCTTTTTATCACCCCCATCCTTAT
TCTCTTTCTCTTTTTTTTTTCCCCCTATTCCTCTTTCCTCTTTCTCTTTT
TTCTTCTTTTTTTATCCTCCCTTCCTTATATTCCTTGCTCCATTCTCTTC
CCTCACCTTATTATTTTTTTTCTCCCCCCAATCC

Query= MSMg01no412_i20.b1 MSMg01no412_i20.b1 CHROMAT_FILE:
MSMg01no412_i20.b1 PHD_FILE: MSMg01no412_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:57 2005
         (463 letters)



>mm_chr2_105867353_105868215
          Length = 863

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttaagggttggacttccatcttcttactatggaaagcttaggaagagagaggtcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttaagggttggacttccatcttcttactatggaaagcttaggaagagagaggtcctg 260

                                                                       
Query: 61  ttccctcttggtttgcagagtgcttgtcatagcaaatcaccttcttttattacactgtat 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ttccctcttggtttgcagagtgcttgtcatagcaaagcaccttcttttattacactgtat 320

                                                                       
Query: 121 aatgggtaggactagtctcattcttcttttattacactgtataatgggtaggactagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgggtaggactagtctcattcttcttttattacactgtataatgggtaggactagtct 380

                                                                       
Query: 181 cattcaacactaatgtggatttatctaacagtgtgggaagtccataatatgccaagcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattcaacactaatgtggatttatctaacagtgtgggaagtccataatatgccaagcatt 440

                                                                       
Query: 241 ctgttctaatcaccatgtagatgaccctattatgcaaatgagaaaattgaaacccagaaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgttctcatcaccatgtagatgaccctattatgcaaatgagaaaattgaaacccagaaa 500

                                                                       
Query: 301 gctttcacatattctgaaagtgtcacagaaagacatgatcttttacagacaagaggtatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctttcacatattctgaaagtgtcacagaaagacatgatcttttacagacaagaggtatg 560

                                                                       
Query: 361 atttttttcttgatatttttaggtttgagtcatattttctgaattattttctatatttac 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 atttttttcttgatatttttaggtttgagtcatattttctgaattattttctatgtttac 620

                                                      
Query: 421 ctaacatggagtgtgtgttggtttgaatgaaaatgcccaatag 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaacatggagtgtgtgttggtttgaatgaaaatgcccaatag 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no412_i20.g1 MSMg01no412_i20.g1 CHROMAT_FILE:
MSMg01no412_i20.g1 PHD_FILE: MSMg01no412_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:57 2005
         (244 letters)



>mm_chr2_105989013_105989655
          Length = 643

 Score =  352 bits (182), Expect = e-101
 Identities = 235/280 (83%), Gaps = 44/280 (15%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctgttcttgctgtaaatagaatggttggtttttgaggcaatcaaagagagtttttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tatctgttcttgctgtaaatagaatggttggtttttgaggcaatcaaagagagtttttaa 532

                                                                       
Query: 61  agtctctctctctctc------------------------------------atgtgtgt 84
           ||||||||||||||||                                     |||||||
Sbjct: 531 agtctctctctctctctctctctctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 472

                                                                       
Query: 85  gtgtgtatctatatgtgaaagataaggtgtatttagtaggtatcacattttggagagagt 144
           ||||||||||||||||||||||||||||       |||||||||||||||||||||||||
Sbjct: 471 gtgtgtatctatatgtgaaagataaggt-------gtaggtatcacattttggagagagt 419

                                                                       
Query: 145 aataaaactcctttaagaagtgtgtttgacacttgcgataaagaaatcccaatgatttgt 204
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 418 aataaaactcctttaagaagtgtg-ttgacacttgcgataaagaaatcccaatgatttgt 360

                                                   
Query: 205 gacttaagattaaaagtcctttatagttcaaaatgcacta 244
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gacttaagattaaaagtcctttatagttcaaaatgcacta 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)