BAC Information

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BAC

Clone NameMSMg01-412M16
Chromosome2 (Build37)
Map Location 79,390,002 - 79,530,712
singlet/doubletdoublet
Overlap geneSsfa2
Upstream geneLOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
Downstream genePpp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412M16.T7 (MSMg01no412_m16.b1)MSMg01-412M16.TJ (MSMg01no412_m16.g1)
ACCAG509479AG509480
length756792
length of high quality
(start - end)		451 (73 - 523)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no412_m16.b1 PHD_FILE: MSMg01no412_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:16 2005CHROMAT_FILE: MSMg01no412_m16.g1 PHD_FILE: MSMg01no412_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,390,002 - 79,390,451)(79,530,469 - 79,530,712)
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTACTGTATCCGCTCCAAACCCTTCTTTAGGTTGCTATTTTAC
TATATTTTTGACAGCAAAGAACCTGGTAATCAAAATGTGTGCCAGCTGTG
CAACTTTAATGAGACCTTGGACAGAGTGGCAATGTGGGATAAAGGAAGTC
AGGTACAGTGTTGGGTACTCCTTGTGGGATGCAGTTTTAAAAACATATGC
CTCCTTTCCTACTGCTATTGCCTGTTTGGTGTGACACGACCCTGTGTAAA
CTCACCCAGCTGTATACATGTTCTCTGTTATCTGTAGTCTATAACAAAAG
TCTTTCAGATGTGTTTGTTCCTCCACCCCTGCCTCTATCCCAAGCCACTC
TTGATTCTGTTGTTGCTTATATTTAGGCGGCAGCATTTCAGAAAAGTGCA
CTCTCTTGGCATTTCTCTTCTTAGATGCTGGCAAGGGCTCCTGCTCTGAA
CCAAGCTTGAGTTCCTGAAGTGTAGATTCAGCTTTCTTTGTTCTAACGTG
CAGAGTGCCCAGAACTTACGGATTTCCTGCCCCTAAGTGCTTTCATGTTC
TCTGGTCTTCCTCTACAAACTAGCCTATTATCTTTATAATAAAGTATGCC
CCCTTTGTATTTCTTGTGGCAACACACTCCCTTACCCTAACCCGTCTTCT
TCCCCTATGCCTCTCTTCGTCCTCTCTTACCCCATTTTATTTCCCCACTC
CCCCCC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGAGATTTGAGAAATGGG
AAATGTTTGGAATTAAAAAGAAAAGCCAATTGTGATGTTTCCGATGTCTC
TTAACTCTTGATTAGAAGACAGGCTTCCTGCCTTTCTTAGTGACTCCTTA
AGGTTTAAATAAAAATGTCCATGTTCAGAGGCCAAATGAGCTGCCTAACC
ATTTGTAAATGTACTCATGTCCCAGCGTCAGAGCATTTGATGTGGTGCCT
GATTTTGTTGTGCTTTCCCTGGATTTTTTAACCCACAGTGCTGCTGGAAC
TTCATGCTGGCGTGGAGGTTACATATGGGCATTAAGTATAGTGTACGGAT
TTCAGCTCTAGGTGGTATAAGCCACAGAACTGACCTTGAATGGTGACATT
TGAAAACAAGTGAAAGGACTTTCATGGAGAAGCCATTTCCTCATTATAGA
CACCAGTTCTGAAAAGAAAATGCCCAGTGCATGCTTTAAGTTTCAGTTTT
ACCATATTCTTACTATGGTAAAAAAAGGAGAGCAAATATTGTTCCCCTAT
TGAAGCCTTCGGGAAACCCTCCCAAAGAATTATTTTTCCCCCCTTTTTTA
ATAAATATGCCCAAATTTTTTATTGCCTTTCTAAGTTTCAATCACCTCTG
GTTTTCCCCCTCTTTTTTACCCCGCGCGGGGGGAGCTAATTTCGCCTATT
CTTCCCCCTATTTCAATATAAAAATTAATACCCCCAAGTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_m16.b1 MSMg01no412_m16.b1 CHROMAT_FILE:
MSMg01no412_m16.b1 PHD_FILE: MSMg01no412_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:16 2005
         (451 letters)



>mm_chr2_79389802_79390652
          Length = 851

 Score =  839 bits (434), Expect = 0.0
 Identities = 446/450 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacccttctttaggttgctattttactatatttttgacagcaaagaacctggtaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacccttctttaggttgctattttactatatttttgacagcaaagaacctggtaatca 260

                                                                       
Query: 61  aaatgtgtgccagctgtgcaactttaatgagaccttggacagagtggcaatgtgggataa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aaatgtgtgccagctgtgcaactttaatgagaccttggacagagcggcaatgtgggataa 320

                                                                       
Query: 121 aggaagtcaggtacagtgttgggtactccttgtgggatgcagttttaaaaacatatgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagtcaggtacagtgttgggtactccttgtgggatgcagttttaaaaacatatgcct 380

                                                                       
Query: 181 cctttcctactgctattgcctgtttggtgtgacacgaccctgtgtaaactcacccagctg 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 cctttcctactgctattgcctgtttggtgtgacacgagcctgtgtaaactcacccagctg 440

                                                                       
Query: 241 tatacatgttctctgttatctgtagtctataacaaaagtctttcagatgtgtttgttcct 300
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatacatgttctctgggatctgtagtctataacaaaagtctttcagatgtgtttgttcct 500

                                                                       
Query: 301 ccacccctgcctctatcccaagccactcttgattctgttgttgcttatatttaggcggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacccctgcctctatcccaagccactcttgattctgttgttgcttatatttaggcggca 560

                                                                       
Query: 361 gcatttcagaaaagtgcactctcttggcatttctcttcttagatgctggcaagggctcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatttcagaaaagtgcactctcttggcatttctcttcttagatgctggcaagggctcct 620

                                         
Query: 421 gctctgaaccaagcttgagttcctgaagtg 450
           ||||||||||||||||||||||||||||||
Sbjct: 621 gctctgaaccaagcttgagttcctgaagtg 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no412_m16.g1 MSMg01no412_m16.g1 CHROMAT_FILE:
MSMg01no412_m16.g1 PHD_FILE: MSMg01no412_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:16 2005
         (244 letters)



>mm_chr2_79530269_79530912
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgagatttgagaaatgggaaatgtttggaattaaaaagaaaagccaattgtgatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcttgagatttgagaaatgggaaatgtttggaattaaaaagaaaagccaattgtgatgtt 385

                                                                       
Query: 61  tccgatgtctcttaactcttgattagaagacaggcttcctgcctttcttagtgactcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccgatgtctcttaactcttgattagaagacaggcttcctgcctttcttagtgactcctt 325

                                                                       
Query: 121 aaggtttaaataaaaatgtccatgttcagaggccaaatgagctgcctaaccatttgtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaggtttaaataaaaatgtccatgttcagaggccaaatgagctgcctaaccatttgtaaa 265

                                                                       
Query: 181 tgtactcatgtcccagcgtcagagcatttgatgtggtgcctgattttgttgtgctttccc 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 tgtactcatgtcccagcgtcagagcatttgatgtggtgccagattttgttgtgctttccc 205

               
Query: 241 tgga 244
           ||||
Sbjct: 204 tgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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