Query= MSMg01no413_d18.b1 MSMg01no413_d18.b1 CHROMAT_FILE:
MSMg01no413_d18.b1 PHD_FILE: MSMg01no413_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:51 2005
(614 letters)
>mm_chr2_107259154_107260166
Length = 1013
Score = 1164 bits (602), Expect = 0.0
Identities = 611/614 (99%), Gaps = 1/614 (0%)
Strand = Plus / Plus
Query: 1 acagtcaaggaaaattgggtggatgagatcctagatttccactatgatctactgaagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtcaaggaaaattgggtggatgagatcctagatttccactatgatctactgaagttt 260
Query: 61 tacagtgttgtcaaactggattgtgctggggaacttggatatccacacagcaaagaatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagtgttgtcaaactggattgtgctggggaacttggatatccacacagcaaagaatgg 320
Query: 121 agctgtgctttctccttacattatacaacaaatgattgtgaaagggttgtctactgaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgtgctttctccttacattatacaacaaatgattgtgaaagggttgtctactgaaac 380
Query: 181 tgaatgagggaatgcatttgtactaatagaaaatgagtagtaagatcaagcctatttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaatgagggaatgcatttgtactaatagaaaatgagtagtaagatcaagcctatttgat 440
Query: 241 tgtaacacctctgtatctagttaattttgggccatattcgctatttaaaattgtctttaa 300
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaacacccctg-atctagttaattttgggccatattcgctatttaaaattgtctttaa 499
Query: 301 gatcatcatctgccacttcctatcctctggggatgctgtcagatgcactgtcatgctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatcatcatctgccacttcctatcctctggggatgctgtcagatgcactgtcatgctctc 559
Query: 361 gttttagtcatgctgatgtagtgcaaattattttaccttggtagtttaaaagtggttcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttttagtcatgctgatgtagtgcaaattattttaccttggtagtttaaaagtggttcat 619
Query: 421 tcttcatgttaacatttttgacatggaagatttagtgtactgagaactgtgttagagtca 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcttcatgttaacattttagacatggaagatttagtgtactgagaactgtgttagagtca 679
Query: 481 aataaaaaatgtaacacttaaggcaatgaaagtgaaatcggaagtaaggtatcaattatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aataaaaaatgtaacacttaaggcaatgaaagtgaaatcggaagtaaggtatcaattatt 739
Query: 541 ttgtagaacatttagagcttggtaaaagaattaatttgatttggtgactagactcagcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttgtagaacatttagagcttggtaaaagaattaatttgatttggtgactagactcagcat 799
Query: 601 gactatatctgaat 614
||||||||||||||
Sbjct: 800 gactatatctgaat 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space: 605812
Effective search space used: 605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_d18.g1 MSMg01no413_d18.g1 CHROMAT_FILE:
MSMg01no413_d18.g1 PHD_FILE: MSMg01no413_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:51 2005
(507 letters)
>mm_chr2_107442018_107442923
Length = 906
Score = 949 bits (491), Expect = 0.0
Identities = 503/507 (99%), Gaps = 1/507 (0%)
Strand = Plus / Minus
Query: 1 ttatttactctgtcataaatgactaagcttgcagaaagagaaataatttggtaaagtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 706 ttatttactctgtcataaatgactaagcttgcagaaagagaaataatttgggaaagtata 647
Query: 61 cttttatgcaaatagttaatttttctctacttgggctgaaaagaataaagaaaatctttg 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cttttatgcaaatagtt-atttttctctacttgggctgaaaagaataaagaaaatctttg 588
Query: 121 tacttttcttcatttcaagaaaataattgaaaagcataggagaatgtgggaaaagggaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tacttttcttcatttcaagaaaataattgaaaagcataggagaatgtgggaaaagggaat 528
Query: 181 caatttattctttataaagagtatagacagctatattcgagatcaaagcttgtttattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 caatttattctttataaagagtatagacagctatattcgagatcaaagcttgtttattct 468
Query: 241 cagcacatgtactttgtttcagatactcattccacccccccaaaaaaaatcatctgtggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cagcacatgtactttgtttcagatactcattccacccccccaaaaaaaatcatctgtggt 408
Query: 301 agtgagctggagtttctagtgcttgctgccaggagtcaaacttaaatcttcatgaaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agtgagctggagtttctagtgcttgctgccaggagtcaaacttaaatcttcatgaaattt 348
Query: 361 gtcaactgcttgttgagttcattatgtaacaaataaaatttcatgcgctttcattttaag 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 347 gtcaactgcttgttgagttcattatgtaacaaataaattttcatgcgctttcattttaag 288
Query: 421 attacataaaaacaatggttaaaatgcagaaagtttttatcatttcttaatgacactaca 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 287 attacataaaaacaatggttaaaatgcggaaagtttttatcatttcttaatgacactaca 228
Query: 481 atattatactattggctatcccctggg 507
|||||||||||||||||||||||||||
Sbjct: 227 atattatactattggctatcccctggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space: 445312
Effective search space used: 445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
