BAC Information

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BAC

Clone NameMSMg01-413E01
Chromosome2 (Build37)
Map Location 46,027,113 - 46,027,639
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042661, LOC100041337, LOC666604
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413E01.T7 (MSMg01no413_e01.b1)MSMg01-413E01.TJ (MSMg01no413_e01.g1)
ACCAG509830AG509831
length7211,594
length of high quality
(start - end)		547 (43 - 589)---
definitionCHROMAT_FILE: MSMg01no413_e01.b1 PHD_FILE: MSMg01no413_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:53 2005CHROMAT_FILE: MSMg01no413_e01.g1 PHD_FILE: MSMg01no413_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGCCCAGTCACTGCCCATCTCAGGGCATAGTAATGGGGTGATGGGCA
AGCAACTAATTAGTTGCTGTCATGCCACATCAGGTGCTGAAACGTCACGC
TGCGGGCTATATAAGCAGCACCATTTTCCGGGTTCAGGGTCTTCCTTATG
TTGAAGCAATAAAAGCTTTGCCGTAGAAGGATCCAGTTGTCCAAGTGAAT
TCTTGCCGGCGAGATACTAGCTCGGGCAAGAAGGCCACACCTTCTACTAG
TGCCATGTCTCATAGGCCAAGCACATTCAAACTACCACAAAGATATTTTA
TAGCAGTTTGTCCTCAATGTCTTTTAAATGAAAGTTTCATAGAAAGATGC
TATAGCAAAATTAATGATAGGAAGGGTTTCAAAGAGCATAGATAACAACT
GAAGTGAGAAATACTTTGGCCAAAATGGAGAGAAGAGTCCAAACTAGACT
TTAGTCTAGGGACAAACTAGAAAGGACCATTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCACCNCACA
ACACACACACTTCTGTTTTACAAATGTGGCAGAAGATCTTGAACCTTGCA
TTGAGCTGTCGGTTCATTTTCGTTATTAAACACTTTCTTTATAACCTTTC
CCCTGGCGTTTCAGGCCATAT

CTATCACACATCCTATACGCTCTCTTANTACACTACTACAATCATTCTGC
TCACAACTCCCTCATCTACGCACTTCTATAACACTACATAATAATCATAC
TCGCTACCCTTATCATTTATACTCACACCCATATATATGAGTATTCCACC
TATCCACGCATATANCACTAGANCCACACAAACAGACACACTAATACTAA
ATTATTCACCCTCATCATAATCTCACACCAGCGCATTATATATCATCCTT
CATCATACTAATTGATCCTTANTCTGACATGATATATTATNCACACTATT
NCCTATATCCCTATCCTTCTTCACGTATGCGTCACATAGAGTTCGATGCG
CTCTTATTATTATTACACCTACACNCGTATTATACTTCTAGCACATCTGA
CNACATATAATATCATTATTGTATTGTATATCATATCACATCACTACTCA
CCACGCCGCGCTACTATANACACCGACAGCTTACATTCACCTCCCTAATA
CACTACGACACTCGTATCAAACCATCATCTAATACACNCTTATATGTACT
CATNTACACACTCAACTACCGCAAATAATGCGACCGACACACGTATCATC
TAANATATCAAATAGTAACATAACTGAGTATATAACGTACTACACTCGCC
TTCATCCTATACATCATCGACTCTCACATATCTACCACATTATAATAAAC
TTCTACATAACCTATCACCTCTAATATCTCTATTACATCTTAACAGAATT
ATCAACATTTTCACATATATATACGTCACATCCGTCGTCCTATAGTACCT
CGCACGTATTTACTCCACCAATATAAATCTCTCTAGATGCCCATCTATCA
ATTATCACACTATCATCAATGTGTACACTCCCAACAAACTAACATCCACT
ACATTATCACACGATATAATCTAGTTCATAATATAATAATCNTCCAGCCT
TATATTATTATATACTACTATGTNCTGTACTCATATTTCCATCCACACCA
AGTNTCACTAGTGGNCACACANATCATATTTATCTCTCCATTTACTTTTT
ACATTCTCAANACAACAAATATTCTATATTCCATCCGCACAATCTATACA
TCATACTCATATATTCTTAGAATACCTCATCAAACTTNTACTATAACCAC
GCTCACCTGCAACTACTACTCAGCTCCAATATCTCCGTTATCTNTATCTC
AATTATGTATCTATCTCATACTCATATACANCAACACGAATCATATACAT
CTATATCACTAATATAATTCNTACATCATACGTACATGAATGAGATATCG
ACANACTATCCATATCTCATATAACTTACACACTATCTAACTCTCTACTA
CATACATCCTATATCGNTCTNCGCTACTAGTTAATCATACTCTCACTACA
TCTACATCCACACNACAATATCTCATTAACAATTAGCACTCCGATACTCA
CATTATGTCTATCTCATACACATATGTACACTACCATATCCCATAGTGTC
TATCTCATACGTACTTCGTACTCACACCTAATTATATACATTATTCATCG
CAATACGTATAGACCACTCATAGATGTACACCTCTTCTACACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_e01.b1 MSMg01no413_e01.b1 CHROMAT_FILE:
MSMg01no413_e01.b1 PHD_FILE: MSMg01no413_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:53 2005
         (547 letters)



>mm_chr2_46026909_46027855
          Length = 947

 Score =  980 bits (507), Expect = 0.0
 Identities = 522/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgcccagtcactgcccatctcagggcatagtaatggggtgatgggcaagcaac 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgcacagtcactgcccatctcagggcatagtaatggggtgatgggcaagcaac 264

                                                                       
Query: 65  taattagttgctgtcatgccacatcaggtgctgaaacgtcacgctgcgggctatataagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taattagttgctgtcatgccacatcaggtgctgaaacgtcacgctgcgggctatataagc 324

                                                                       
Query: 125 agcaccattttccgggttcagggtcttccttatgttgaagcaataaaagctttgccgtag 184
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 agcaccattttccgggttcggggtcttccttatgttgaagcaaaaaaagctttgccgtag 384

                                                                       
Query: 185 aaggatccagttgtccaagtgaattcttgccggcgagatactagctcgggcaagaaggcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggatccagttgtccaagtgaattcttgccggcgagatactagctcgggcaagaaggcc 444

                                                                       
Query: 245 acaccttctactagtgccatgtctcataggccaagcacattcaaactaccacaaagatat 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 acaccttctactagtgccatgtctcatgggccaagcacattcaaactaccacaaagatat 504

                                                                       
Query: 305 tttatagcagtttgtcctcaatgtcttttaaatgaaagtttcatagaaagatgctatagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttatagcagtttgtcctcaatgtcttttaaatgaaagtttcatagaaagatgctatagc 564

                                                                       
Query: 365 aaaattaatgataggaagggtttcaaagagcatagataacaactgaagtgagaaatactt 424
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 aaaattaatgataggaagggtttcaaagagcaaagataacaactgaagtgagaaatactt 624

                                                                       
Query: 425 tggccaaaatggagagaagagtccaaactagactttagtctagggacaaactagaaagga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggccaaaatggagagaagagtccaaactagactttagtctagggacaaactagaaagga 684

                                                          
Query: 485 ccattctctctctctctctctctctctctctctctctctctctctct 531
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccattctctctctctctctctctctctctctctctctctctctctct 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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