BAC Information

Click to search

BAC

Clone NameMSMg01-413G18
Chromosome2 (Build37)
Map Location 118,756,348 - 118,941,395
singlet/doubletdoublet
Overlap geneLOC677379, Ccdc32, Rpusd2, Casc5, Rad51
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14
Downstream gene1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413G18.T7 (MSMg01no413_g18.b1)MSMg01-413G18.TJ (MSMg01no413_g18.g1)
ACCAG509960AG509961
length750768
length of high quality
(start - end)
602 (31 - 632)507 (61 - 567)
definitionCHROMAT_FILE: MSMg01no413_g18.b1 PHD_FILE: MSMg01no413_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:06 2005CHROMAT_FILE: MSMg01no413_g18.g1 PHD_FILE: MSMg01no413_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,940,909 - 118,941,395)(118,756,348 - 118,756,854)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGAACTATA
TACGTACAGCAACAACAATCTAAAAGTGAACAGTATTTCCAGCCTTGAAA
ACGCAGGCTGGAAATACATATAGCAGCCTATGGAACGGTCCTTGTCCAGG
AGATGAAAAAGAGGTACCAGGGCGAATCCTCAGTGCCACCAAGCAAACAA
GAAACTGAGTGTATTTATCTTACTGTCAGCGATGAAGATGGATTTCCGGT
TCCTGGACAGGTTAAATAACTACCGAAATAAACCCTTAGCTCTGACAACA
TTTACACTCTTAACTTTGGGCTTTGGGATGTAGATCAATTGGTAGCATTT
GCCTACCACGCACCAAGCCCTGAGTTTGAAGCTATGCAGTGCATAAAACC
AGGCATGGTAGTTATGTCTGTAATCCCAGCATTTGGGAAGTAGGTAAGGA
GACTAGAAACTCAAGGCCATTCATCCTCTGGGGTATAACAAGTTTGAGAT
TAGCATGGATTACCTATCTCAAAAAAAAATTCAAAACTGTAGAGAAATTA
TTTGTTATATACATAATTAGATGCATAATCAGAGGTGGAAAATCAGAACA
CAAACATAAAGAAATCATTCAAGCTGGGCAGCGGTGGCACACGCCCAGCA
CTTGGGAGGGAGAGGTAGGCGGATTTCTGACTTCTAGGCCAGCCTGTTCT
ACAAAGTGAGTTCCCGCATGGCCAGGGCTATCGAGAAACCCTGGCCAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTACCTTTCCCTGGGTCCGCTGTGATTCCCACTCAGCGTT
GAACCCTCTGCTCTAGGCTGGCCCTCAGGAGAACAAGGGCCCCTTTAAAG
TAGCTCTCCCTAGGACAACAGAGGGAAGGGATTAGCGTTGTTTAACTCCT
GTGACAGTTGGGGGCCAAGGGCAGAGGAAAGGGGAAAGGCCCCATGGGGT
CTGGTTCTCTGAGTCTGGACTCTGACTCCATTTCGAAGCTCCCATGCTTG
TTTCTCTGCCTGTCTGAGGCAGCTGTACAGAAACTCCCCTCCCTGCAGGA
GGCCACACAATTCAGGACCCCGTGGGAAGGCATAATAAGGGCAGAAGAGC
TGCCTACTCACCTCTCTGGGAGAACGCAGAACCCTCGCCTGCTTCTCCTA
GGGGATCCAGTCACCAGAGGGACCAGACTCCCAAGCCCACTCCTAGAATG
GACCCAGAGCCTTTCTTTCTCAAGCCAGCTTCTACCTGACCTGCTTTTCA
GATTCTAAAAGCAGTGGTGAGTAACAATGGTTGCTCTAAGTCGTGAGAGC
CTGACTAGTGTGTTATACGTATCCTTTGCGACCCTTGTGACCCAGTACAG
TTAGAAAAAAACCTGTTTTCTTGGTTAAAAAGATGGAGGGCAAGCCTCCA
TTTTATAAACTTATTTCGGTCCCGGGTTGGCCCCTCTTAAAGGATATCTG
TTATCTTTTATTACACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_g18.b1 MSMg01no413_g18.b1 CHROMAT_FILE:
MSMg01no413_g18.b1 PHD_FILE: MSMg01no413_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:06 2005
         (602 letters)



>mm_chr2_118940909_118941910
          Length = 1002

 Score =  926 bits (479), Expect = 0.0
 Identities = 485/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgaactatatacgtacagcaacaacaatctaaaagtgaacagtatttccagc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggaattcttgaactagatacgtacagcaacaacaatctaaaagtgaacagtatttccagc 428

                                                                       
Query: 64  cttgaaaacgcaggctggaaatacatatagcagcctatggaacggtccttgtccaggaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cttgaaaacgcaggctggaaatacatatagcagcctatggaacggtccttgtccaggaga 368

                                                                       
Query: 124 tgaaaaagaggtaccagggcgaatcctcagtgccaccaagcaaacaagaaactgagtgta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgaaaaagaggtaccagggcgaatcctcagtgccaccaagcaaacaagaaactgagtgta 308

                                                                       
Query: 184 tttatcttactgtcagcgatgaagatggatttccggttcctggacaggttaaataactac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tttatcttactgtcagcgatgaagatggatttccggttcctggacaggttaaataactac 248

                                                                       
Query: 244 cgaaataaacccttagctctgacaacatttacactcttaactttgggctttgggatgtag 303
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 247 cgaaataaacccttagctctgacaacatttacactcataactttgggctttgggatgtag 188

                                                                       
Query: 304 atcaattggtagcatttgcctaccacgcaccaagccctgagtttgaagctatgcagtgca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 atcaattggtagcatttgcctaccacgcaccaagccctgagtttgaagctatgcagtgca 128

                                                                       
Query: 364 taaaaccaggcatggtagttatgtctgtaatcccagcatttgggaagtaggtaaggagac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 taaaaccaggcatggtagttatgtctgtaatcccagcatttgggaagtaggtaaggagac 68

                                                                       
Query: 424 tagaaactcaaggccattcatcctctggggtataacaagtttgagattagcatggattac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  tagaaactcaaggccattcatcctctggggtataacaagtttgagattagcatggattac 8

                  
Query: 484 ctatctc 490
           |||||||
Sbjct: 7   ctatctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no413_g18.g1 MSMg01no413_g18.g1 CHROMAT_FILE:
MSMg01no413_g18.g1 PHD_FILE: MSMg01no413_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:06 2005
         (507 letters)



>mm_chr2_118756148_118757054
          Length = 907

 Score =  980 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacctttccctgggtccgctgtgattcccactcagcgttgaaccctctgctctaggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacctttccctgggtccgctgtgattcccactcagcgttgaaccctctgctctaggctg 260

                                                                       
Query: 61  gccctcaggagaacaagggcccctttaaagtagctctccctaggacaacagagggaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctcaggagaacaagggcccctttaaagtagctctccctaggacaacagagggaaggg 320

                                                                       
Query: 121 attagcgttgtttaactcctgtgacagttgggggccaagggcagaggaaaggggaaaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attagcgttgtttaactcctgtgacagttgggggccaagggcagaggaaaggggaaaggc 380

                                                                       
Query: 181 cccatggggtctggttctctgagtctggactctgactccatttcgaagctcccatgcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatggggtctggttctctgagtctggactctgactccatttcgaagctcccatgcttg 440

                                                                       
Query: 241 tttctctgcctgtctgaggcagctgtacagaaactcccctccctgcaggaggccacacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctctgcctgtctgaggcagctgtacagaaactcccctccctgcaggaggccacacaa 500

                                                                       
Query: 301 ttcaggaccccgtgggaaggcataataagggcagaagagctgcctactcacctctctggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaggaccccgtgggaaggcataataagggcagaagagctgcctactcacctctctggg 560

                                                                       
Query: 361 agaacgcagaaccctcgcctgcttctcctaggggatccagtcaccagagggaccagactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaacgcagaaccctcgcctgcttctcctaggggatccagtcaccagagggaccagactc 620

                                                                       
Query: 421 ccaagcccactcctagaatggacccagagcctttctttctcaagccagcttctacctgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaagcccactcctagaatggacccagagcctttctttctcaagccagcttctacctgac 680

                                      
Query: 481 ctgcttttcagattctaaaagcagtgg 507
           |||||||||||||||||||||||||||
Sbjct: 681 ctgcttttcagattctaaaagcagtgg 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)