Query= MSMg01no414_b23.b1 MSMg01no414_b23.b1 CHROMAT_FILE:
MSMg01no414_b23.b1 PHD_FILE: MSMg01no414_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:02 2005
(462 letters)
>mm_chr2_41812786_41813647
Length = 862
Score = 855 bits (442), Expect = 0.0
Identities = 457/462 (98%)
Strand = Plus / Plus
Query: 1 aagattaaggactgcatattaccaaggctgaattccagcagacgtcagttaagggtcagg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 aagattaaggactgcatattaccaaggctgaattccaccagacgtcagttaagggtcagg 260
Query: 61 tccaattaaaaacataatattatttcaagaaaataaatgtttatataagagacctttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaattaaaaacataatattatttcaagaaaataaatgtttatataagagacctttttc 320
Query: 121 tttataaatgtagcaattatgtgaattggtagactcaaaattacataaaatagtcaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttataaatgtagcaattatgtgaattggtagactcaaaattacataaaatagtcaaaac 380
Query: 181 tcttaagaggtgtctgtgggatttttgtgcatacactatgtggtaggggaggtatttggg 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tcttaagaggtgtctgtgggatttttgtgcatacactgtgtggtaggggaggtatttggg 440
Query: 241 tttgcttgtttgtttttgtctgaatgtttcattttttaaaaatttcacttcttctcatat 300
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tttgcttgtttgtttttgtccgaatgtttcattttttaagaatttcacttcttctcatat 500
Query: 301 ttaatctttgtaggtttcaaaggaccctgcccactgaatggaattaaactctatggatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaatctttgtaggtttcaaaggaccctgcccactgaatggaattaaactctatggatga 560
Query: 361 aatagttatgtttttctattgacagagaaattggaacatatttctcaatgacttaactga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatagttatgtttttctattgacagagaaattggaacatatttctcaatgacttaactga 620
Query: 421 gttgtgatgttattttcataggataggagcagatcgtgtctg 462
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 gttgtgatgttattttcataggataggagcagattgtgtctg 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_b23.g1 MSMg01no414_b23.g1 CHROMAT_FILE:
MSMg01no414_b23.g1 PHD_FILE: MSMg01no414_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:02 2005
(514 letters)
>mm_chr2_42000518_42001431
Length = 914
Score = 706 bits (365), Expect = 0.0
Identities = 441/499 (88%), Gaps = 54/499 (10%)
Strand = Plus / Minus
Query: 1 cagacacagaaatgataagagtagtcaaactttctcaggacagcattatgggttaaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagacacagaaatgataagagtagtcaaactttctcaggacagcattatgggttaaggca 386
Query: 61 aggcagcaacactgagggaagttttagaaaatatatcctccacaccacaaagagattaaa 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 aggcagcaacactgagggaagttttagaaaatatatcatccacaccacaaagagattaaa 326
Query: 121 gacaataataatgaaaacgaaatcacatgctgggtaggaaaaaattttaaatattcattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacaataataatgaaaacgaaatcacatgctgggtaggaaaaaattttaaatattcattg 266
Query: 181 gcactaaatattttagatgtgtgcatgacctgaaattaggaattagggtgacagtagtta 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctctaaatattttagatgtgtgcatgacctgaaattaggaattagggtgacagtagtta 206
Query: 241 cactactttctttctttctttctttctttctttctttctttctttctttctttctttctt 300
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cactactttctttctttctttctttctttctttctttctttctttct------------- 159
Query: 301 tctttctttctttctttctctctctctctctctctctctctctctctctctctctctctc 360
|||||||||||||||||||||||||||||||| ||| |
Sbjct: 158 -----------------ctctctctctctctctctctctctctctctctttct-t----- 122
Query: 361 tctctctctctctctctctttctctttcagtactctttcttcaatatgagtacaattttc 420
||||||| ||| || |||||||||||||||||||||||||||||
Sbjct: 121 ----------------tctttct-ttt-agcactctttcttcaatatgagtacaattttc 80
Query: 421 taaaatatccataaatccggcagcatcccatttcaacaatgaggagctatagttccagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 taaaatatccataaatccggcagcatcccatttcaacaatgaggagctatagttccagga 20
Query: 481 agcaggagagtgaactgat 499
|||||||||||||||||||
Sbjct: 19 agcaggagagtgaactgat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
