BAC Information

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BAC

Clone NameMSMg01-414C20
Chromosome2 (Build37)
Map Location 118,879,257 - 119,073,457
singlet/doubletdoublet
Overlap geneCasc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2
Downstream geneRhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414C20.T7 (MSMg01no414_c20.b1)MSMg01-414C20.TJ (MSMg01no414_c20.g1)
ACCAG510535AG510536
length777766
length of high quality
(start - end)		517 (48 - 564)396 (77 - 472)
definitionCHROMAT_FILE: MSMg01no414_c20.b1 PHD_FILE: MSMg01no414_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:07 2005CHROMAT_FILE: MSMg01no414_c20.g1 PHD_FILE: MSMg01no414_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,879,257 - 118,879,769)(119,073,062 - 119,073,457)
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGCCAGTTGCGGCTACATAGTGAGACTATCTTAAGAACCAA
AAACAGGGGCTGCAGAGATGGCTCAGTGGTTAAGAGCACTGGGTGCTCTT
TCAGAGGTCCTGGGTTCAATTCCCAGCACCTACAGGGCAGCTCATAATTG
TCTGTAATTATAGTTCCAGGAGATCTGATACCCTCACACCAATGCACATA
AAACTAAATAAATTTTTTAAAAAACAAATAACAACAAAAACTCTAAACCC
AAATACTTATTTCAGACTTAAATTCAGACTTATGAAAGTCTGTTCCCTAA
ATTTGGCTTTTATTTTATGTGAAAAATATTATCTTTTAGGTATCTTATTT
TTCCTTATTGTTAAAAGTAAGAACATTGATACAGAGAAACCCTGTCTTGA
AAAAAACCAAAAAAAAAAAAAAAAAGTAAGAACATTGACTGTTAGTAGGT
ATATGGTATTAATTTAATGTTATGATAGAAATGGCTAGTAGTAGTTGTCA
AACTTTATAGCTATTATTTTTAAACCTGAGATGTCTTTTCTTACCTGAAA
ATAAGGGTCTAGCTAATGCGTGCGGGGAGGAAATCTTGAATGTATTTATT
TTGGGGGAGGTATACTGGCTAAGGGGAAGGCCGAAGGCTAATTTAATGGG
AGGCCAATCTGGGATTCTCCCACACCGGGGGTTTCTGGGGTATTCACTTT
GGTTTTTAACCTCTCTGAACTTGTTTN

NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTTGGTAGCGAGTGCCTGAG
CGTCTTTATCCCCGTTAAACCATCTTGTTGGCCTCAAAGTTTCCTTTTTC
AATGTAATTTCTCTGTGTCAAGGTCTCTGATTCCTACCACCCAGTAATTT
GAACTTTTAACCAAAGGGGTGGGCTTTAGGCAAGAAAGAGTACCCAGCTT
AAGCAGAGAGGTCTCAACACCTGTGAGTGACCTTTCACCTAAAACCACTG
GGAAACAGATGTTGACATTACCGATTCATTATCAGTAGTAAAATTAGCTA
TGAAGTAGCAACGGAAATAGTTTTATGGTTGGAGGTCCCACAACAGGAGG
ACTGTATTAAAGAGTTGTAGCCGTATGAAGGTTCAACACACTGAGCTGAA
GTGGTTGGGTTTTTGGGGAGTGGNTTGAGNNNNTTNNNTTTTTTTTNTTT
TTTTTTTTTTTTTTTTTGTNTTTTTTTTTTTTGTTTTGTTTTTTTTGTGT
TTNTTTTTGTTTTTTTTTGTTTTTTTTTTGTTTTTTGTTTTTGTTTTTGT
TTTGGTTTTTTTGNGGTGTTTTGGTGTGTTTTTTGTGTGTGCTTGTNTGT
TGCTTTTGTGTGTTTTTTTTTTTTTTTTGTTNTTTTGTGTGTGTTCTTTT
TGTTTGTGTTTTTTTTTGCGGTGTTGTTGCGTTCTTTTTTTTGATTTACT
CCTTTTCTTATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_c20.b1 MSMg01no414_c20.b1 CHROMAT_FILE:
MSMg01no414_c20.b1 PHD_FILE: MSMg01no414_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:07 2005
         (517 letters)



>mm_chr2_118879053_118879969
          Length = 917

 Score =  977 bits (505), Expect = 0.0
 Identities = 511/513 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggccagttgcggctacatagtgagactatcttaagaaccaaaaacaggggct 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggccaggtggggctacatagtgagactatcttaagaaccaaaaacaggggct 264

                                                                       
Query: 65  gcagagatggctcagtggttaagagcactgggtgctctttcagaggtcctgggttcaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagagatggctcagtggttaagagcactgggtgctctttcagaggtcctgggttcaatt 324

                                                                       
Query: 125 cccagcacctacagggcagctcataattgtctgtaattatagttccaggagatctgatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccagcacctacagggcagctcataattgtctgtaattatagttccaggagatctgatac 384

                                                                       
Query: 185 cctcacaccaatgcacataaaactaaataaattttttaaaaaacaaataacaacaaaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctcacaccaatgcacataaaactaaataaattttttaaaaaacaaataacaacaaaaac 444

                                                                       
Query: 245 tctaaacccaaatacttatttcagacttaaattcagacttatgaaagtctgttccctaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctaaacccaaatacttatttcagacttaaattcagacttatgaaagtctgttccctaaa 504

                                                                       
Query: 305 tttggcttttattttatgtgaaaaatattatcttttaggtatcttatttttccttattgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttggcttttattttatgtgaaaaatattatcttttaggtatcttatttttccttattgt 564

                                                                       
Query: 365 taaaagtaagaacattgatacagagaaaccctgtcttgaaaaaaaccaaaaaaaaaaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaaagtaagaacattgatacagagaaaccctgtcttgaaaaaaaccaaaaaaaaaaaaa 624

                                                                       
Query: 425 aaaagtaagaacattgactgttagtaggtatatggtattaatttaatgttatgatagaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaagtaagaacattgactgttagtaggtatatggtattaatttaatgttatgatagaaa 684

                                            
Query: 485 tggctagtagtagttgtcaaactttatagctat 517
           |||||||||||||||||||||||||||||||||
Sbjct: 685 tggctagtagtagttgtcaaactttatagctat 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no414_c20.g1 MSMg01no414_c20.g1 CHROMAT_FILE:
MSMg01no414_c20.g1 PHD_FILE: MSMg01no414_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:07 2005
         (396 letters)



>mm_chr2_119073050_119073845
          Length = 796

 Score =  758 bits (392), Expect = 0.0
 Identities = 395/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcttggtagcgagtgcctgagcgtctttatccccgttaaaccatcttgttggcctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 caggcttggtagcgagtgcctgagcgtctttatccccgttaaaccatcttgttggcctca 349

                                                                       
Query: 61  aagtttcctttttcaatgtaatttctctgtgtcaaggtctctgattcctaccacccagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aagtttcctttttcaatgtaatttctctgtgtcaaggtctctgattcctaccacccagta 289

                                                                       
Query: 121 atttgaacttttaaccaaaggggtgggctttaggcaagaaagagtacccagcttaagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atttgaacttttaaccaaaggggtgggctttaggcaagaaagagtacccagcttaagcag 229

                                                                       
Query: 181 agaggtctcaacacctgtgagtgacctttcacctaaaaccactgggaaacagatgttgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 agaggtctcaacacctgtgagtgacctttcacctaaaaccactgggaaacagatgttgac 169

                                                                       
Query: 241 attaccgattcattatcagtagtaaaattagctatgaagtagcaacggaaatagttttat 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 attaccgattcattaacagtagtaaaattagctatgaagtagcaacggaaatagttttat 109

                                                                       
Query: 301 ggttggaggtcccacaacaggaggactgtattaaagagttgtagccgtatgaaggttcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ggttggaggtcccacaacaggaggactgtattaaagagttgtagccgtatgaaggttcaa 49

                                               
Query: 361 cacactgagctgaagtggttgggtttttggggagtg 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 48  cacactgagctgaagtggttgggtttttggggagtg 13


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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