BAC Information

Click to search

BAC

Clone NameMSMg01-414G01
Chromosome2 (Build37)
Map Location 65,367,480 - 65,367,708
singlet/doubletsinglet
Overlap geneScn3a
Upstream geneLOC620544, LOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik
Downstream geneScn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414G01.T7 (MSMg01no414_g01.b1)MSMg01-414G01.TJ (MSMg01no414_g01.g1)
ACCAG510688AG510689
length807780
length of high quality
(start - end)
234 (76 - 309)342 (72 - 413)
definitionCHROMAT_FILE: MSMg01no414_g01.b1 PHD_FILE: MSMg01no414_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:24 2005CHROMAT_FILE: MSMg01no414_g01.g1 PHD_FILE: MSMg01no414_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAAGCANGTTTCAATATATTAGAGAGAATACTGGGCCTTAAGGA
AGGCTTTGAATTTTCTTATTAACCATGGTCTGAACCCAGCCACGTAAGAT
TAATTTCACAGTTAAATTGTGCTTCTGAATCTTTTGTGTTGGATAGTTCT
TAGGTGTCCAAAAATGAATTGACATTTATTCCTTAACTACAACCTACTTT
ATTCAGCATGCTTATCATGTGCACTATTTTGACCAACTGGGTGTATTTAT
GACATTTGAGCAAATCCTCCCTGAATGGTTTTTTTTTAAGGGAAAAGGGA
AAGGAAGGAAATAACGTTTCCTTTGGAAAGGGGAAACCCCCCCCCCCCAC
CCCCTTCCGCTTTCTCTCTATTTTTGCTTATGTNNCTTCCTCCCTCTTAA
AGTTTTCCGGGGGCACACAGGCGTTGTTGGGTGGTATAATACAATCTCCT
CGTCTCTTTCATTTATGTCCCCTTCTCTCTCCTCTTTTTTTTTTCTGTCT
TTCTCTTTGTAAATTATGGCTACTCCCCCATCATTCCCTCCGAACATCTA
TATTGATCCATCTCTTTTTGCTCTACTTTTCTTATTTGTTGTAAGGCTAT
TAGCATTACATTGTTTTAAGAGNCNTTTCTATTACCCTTTTTTTCGCTCT
TCTCTCTTCTCTCTCCTTTTCTATGACCCATTTTTTATTTATTTTTTTCT
GCTTATCTTTATTTTTTTCTCATACTTTCTTCTCATTTAACGTTTTTTTT
ATAATTA
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCTATTCTCAATTCCTGAGTAGCTAGCA
TTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAT
ATATATATATATATATATATATATATATATATATACACATATATACATAT
AGGTATATATGTATACTGATATGTATTTTTAAATATGTATGTATGAAGGC
TATCTACTTGTTGTAGTTAATTATAAGTCTTCTGAGTGCTGGGATTAGAG
GCACATGCCACCACACCTGGTTTATGGGTTACTCCCTCAGCAGGACTGAG
CACATAAACCTGGGGCTTGCTCCTGTCTAAGATACTTGACCTTAAGTGAA
TATATACAAGACCTCGGCAGAGAAATAGTTGGGAATCTCTTGGCTCACCT
ACAGTTAGACTCCTCACAGGAAAGAAAAGAGGTGAGGAGTGCCACTTGTC
ACCTGTACGACTGTCACCTGCACTGCGGCAACTAGAAATGGTCTAGAAGT
GAGAAAGGTTACCTGCTCTGAGTTCTGAATATAATTCCAGGTAGAACTGA
AATGAAAGATTCTAAGCAAACTGGCTAAGAATCCCATCCCTACATGACAC
AGATGCTGTCTGATATTTATACTTATTCACCATACCCCTATACACCATAT
ATATCACCATATACCTATTTATTTACACACGTACTCACACGTTTTATATA
TTACCCTATTCTATTTATTTTCGTGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_g01.b1 MSMg01no414_g01.b1 CHROMAT_FILE:
MSMg01no414_g01.b1 PHD_FILE: MSMg01no414_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:24 2005
         (234 letters)



>mm_chr2_65367280_65367911
          Length = 632

 Score =  412 bits (213), Expect = e-120
 Identities = 226/231 (97%), Gaps = 2/231 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagagagaatactgggccttaaggaaggctttgaattttcttattaaccatggtctgaac 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 429 tagagagaatactgggccttaagggaggctttgaattttcttattaaccatggtctgaac 370

                                                                       
Query: 61  ccagccacgtaagattaatttcacagttaaattgtgcttctgaatcttttgtgttggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ccagccacgtaagattaatttcacagttaaattgtgcttctgaatcttttgtgttggata 310

                                                                       
Query: 121 gttcttaggtgtccaaaaatgaattgacatttattccttaactacaacctactttattca 180
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gttcttaggcgtctaaaaatgaattgacatttattccttaactacaacctactttattca 250

                                                              
Query: 181 gcatgcttatcatgtgcactattttgaccaactgggtgtatttatgacatt 231
           ||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 249 gcatgcttatcatgtgcactattttgaccaactg--tgtatttatgacatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 632
Length adjustment: 9
Effective length of query: 225
Effective length of database: 623
Effective search space:   140175
Effective search space used:   140175
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)