Query= MSMg01no414_h04.b1 MSMg01no414_h04.b1 CHROMAT_FILE:
MSMg01no414_h04.b1 PHD_FILE: MSMg01no414_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:29 2005
(458 letters)
>mm_chr2_72374792_72375649
Length = 858
Score = 762 bits (394), Expect = 0.0
Identities = 438/458 (95%), Gaps = 11/458 (2%)
Strand = Plus / Minus
Query: 5 gaattcagagctaatttgcccattgggaattgtgttgggttatagaaagaaggccactgg 64
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaattcagagctaagtggaccattgggaattgtgttgggttatagaaagaaggccactgg 482
Query: 65 ggatatgttttgcctccagccagttcctctatgcccttctctctggttcctggctgtcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggatatgttttgcctccagccagttcctctatgcccttctctctggttcctggctgtcac 422
Query: 125 caaatgagactctttcctctcccactatggccccagaatcacagatgcaggcagctgttg 184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaatgagactctttcctctctcactatggccccagaatcacagatgcaggcagctgttg 362
Query: 185 cctgaaatctctgaaaccataagccaaacaagcatctattttattccgttattttcccag 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 361 cctgaaatctctgaaaccataagccaaacaagcatctatttcattccgttattttcccag 302
Query: 245 gtcacaaggtcagaaaaaggcaactgaccaggagggta----ttttcttcactggagaag 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 301 gtcacaaggtcagaaaaaggcaactgaccaggagggtaccag----cttcactggagaag 246
Query: 301 agggttatttctaggagacagctggaggaaataaaaaaaaagaaaatgagacaatgccgg 360
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 245 agggttatttctgggagacagctggaggaaataaaaaaa---aaaatgagacaatgccgg 189
Query: 361 ggcctagcaaacacagaagtggatgctcacagtcagctattggatggatcacagggtccc 420
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 188 ggcctagcatacacagaagtggatgctcacagtcagctattggatggatcacagggcccc 129
Query: 421 caatgtaggagctagagaaagtacccaaggagctaaag 458
||||| ||||||||||||||||||||||||||||||||
Sbjct: 128 caatggaggagctagagaaagtacccaaggagctaaag 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_h04.g1 MSMg01no414_h04.g1 CHROMAT_FILE:
MSMg01no414_h04.g1 PHD_FILE: MSMg01no414_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:29 2005
(402 letters)
>mm_chr2_72203619_72204420
Length = 802
Score = 770 bits (398), Expect = 0.0
Identities = 401/402 (99%)
Strand = Plus / Plus
Query: 1 attcatcggacatcataaacttgtcttaacattccatgttcttaagatgctttcatgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcatcggacatcataaacttgtcttaacattccatgttcttaagatgctttcatgtaa 260
Query: 61 tatcactgtcacgtctctgcaggaccataggacacagggagcacctgtgagtgcccatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcactgtcacgtctctgcaggaccataggacacagggagcacctgtgagtgcccatag 320
Query: 121 cacacagggagcacctgtgagtgtccatagcccacatggagcacctgtgagtaggcaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacagggagcacctgtgagtgtccatagcccacatggagcacctgtgagtaggcaaag 380
Query: 181 agacatgctgacactggcagttgcctgagcattgtggaaacgcacctacacagatggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacatgctgacactggcagttgcctgagcattgtggaaacgcacctacacagatggaaa 440
Query: 241 cagccctcacatctctttactgacgtacgtcttgggtgctcagctaattacactcctgtt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagccctcacagctctttactgacgtacgtcttgggtgctcagctaattacactcctgtt 500
Query: 301 attacttaatggtacttagggtggatagatagcaaacaaatcaagtgacagcttccagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attacttaatggtacttagggtggatagatagcaaacaaatcaagtgacagcttccagct 560
Query: 361 gtgctctcgattccttagtgttcctgttctagctgcagcacc 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgctctcgattccttagtgttcctgttctagctgcagcacc 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
