BAC Information

Click to search

BAC

Clone NameMSMg01-414K01
Chromosome2 (Build37)
Map Location 154,587,523 - 154,763,370
singlet/doubletdoublet
Overlap geneLOC435692, Raly, Eif2s2
Upstream geneMapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936
Downstream genea, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414K01.T7 (MSMg01no414_k01.b1)MSMg01-414K01.TJ (MSMg01no414_k01.g1)
ACCAG510878AG510879
length830825
length of high quality
(start - end)		277 (44 - 320)171 (72 - 242)
definitionCHROMAT_FILE: MSMg01no414_k01.b1 PHD_FILE: MSMg01no414_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:44 2005CHROMAT_FILE: MSMg01no414_k01.g1 PHD_FILE: MSMg01no414_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,763,099 - 154,763,370)(154,587,523 - 154,587,692)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGCCTCCTGGCTCGTGCCTTGAGTTCCTGCCCTGACTTCCCTTCCT
GTAAGCTATAAGATGAAATAAATCCCTTCCTCCTCAGGTTGCTTCCAGTC
ACGATGTTTATCGTAGCAACTGAAAGCGGACTAGGGCATTCCTTCCAGAG
TGCTACTGAACGTGAGTATGTGAGATGTATGAGGGGCTTTGTCCTAAGCC
TCCCGGAGTTGCACAACTGGAGTTATCATAAGGTCCCAAGATGGAGTTGA
GACCTGTGTGCTTCCTGCATTTTCTTTTTTGCTCAACTATATAATACGAT
TGGAAAAGGGAGGAAACTCTCAAAGCCCTTCGGTTCCAACAGGCTGCTCT
TCGGTTCTGTCCAACAAGCACATGAGTCTACCTTCCAGACTCTTCCACAC
TTGTAGGCCGGTCACACAAGATGTGGTCCATCCTTACTCCCCCTCCTTGA
GGTAACTTCGCTCACCTTTATCGGACACCCTCTTAAGCTCAATGTCCTGT
TTCTTTGCTAGTACCACTTTATTTATTCTCCCTCTGTTTCTCTCTCTTTC
TCCTATCTTTATTCTATTCGCTTTTCCCCTCCCATTTTCTTTTCTCTCCA
TCCTTTTTATCCTTTTTTTCTATTATAACTCCCTCTTCTCCCTCTTTTTT
TCGCCCAAATACCTTATCACATTACCTTTTCTAATCTTCCCTTTCTGTTT
CTTCTTTATAACCCCTTCTTCTTTTTTCTATTGCCTCTCTCTATATTTTT
CCCATCGTACCTTCGTTTTTTTTCGCCTCT

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCCCCAATTCAAGTTACTGCACCTCAGTGAACTCT
CATCTCCTTATTTGTCCAGTGGGAGAGATCTTGTTTTGAGGACTGGGTAA
GGAAACTTGTGGGTGGAGCCCTCACTAAGCAGCCTGGCTCCTCGTAACCG
ATCGATAACAGCTTCTATTATCTTTATACACACCATTATCATCACCATCA
TCATGATTCAAAGGCCTTATGGAGCCTACTTAGAACAGGCAACATCAACT
CAAATACCAGCAGGAGTCAGGCAAGCATTTTTTTTAAGTGCGGGCGAGCC
GTGTACACAAACACACTGGTACAAGCGGCCAGCTAGAGAGAGTGTGAGAG
CCCCTTTTGTCTCGTGTCGGAACCCACTGCTCAGTAATCTCGATTTACTT
GCCAAGTGGCGTGTGACGTCATTGCTGCTAGCTTTTCTTATACTATTCGC
TGTATTGTCTGAACCTCGGCACTCTATCGTCAGCTTCACTACAAGCTTTG
CTTACATCTTATTTGCTTCTTTACCCTCCCGTCTTTTTCCCATTTTTTTT
TTTTACTTGTCTTCCTTCTACCTCTTCCATTTTTTCTTTTCTCTTCTCCT
ATCTGCTTCTCTTTTCCCTCTTTTTCCTTTATTTTCTTTTTTTTTTTCTT
CCTCTCCTCCTTTTATTTTTTTACTTTCTCTTTTTTCCCACTTCATCTTT
TTCTTCTTTTTACCTCTTTATTTCTCTTCTCTTATTTATTTTACATTTTA
CTATTATTTCTTCTCTTTATCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_k01.b1 MSMg01no414_k01.b1 CHROMAT_FILE:
MSMg01no414_k01.b1 PHD_FILE: MSMg01no414_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:44 2005
         (277 letters)



>mm_chr2_154762754_154763430
          Length = 677

 Score =  511 bits (264), Expect = e-149
 Identities = 270/272 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgcctcctggctcgtgccttgagttcctgccctgacttcccttcctgtaagct 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaattcctgcctccaggttcgtgccttgagttcctgccctgacttcccttcctgtaagct 558

                                                                       
Query: 65  ataagatgaaataaatcccttcctcctcaggttgcttccagtcacgatgtttatcgtagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ataagatgaaataaatcccttcctcctcaggttgcttccagtcacgatgtttatcgtagc 498

                                                                       
Query: 125 aactgaaagcggactagggcattccttccagagtgctactgaacgtgagtatgtgagatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aactgaaagcggactagggcattccttccagagtgctactgaacgtgagtatgtgagatg 438

                                                                       
Query: 185 tatgaggggctttgtcctaagcctcccggagttgcacaactggagttatcataaggtccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tatgaggggctttgtcctaagcctcccggagttgcacaactggagttatcataaggtccc 378

                                           
Query: 245 aagatggagttgagacctgtgtgcttcctgca 276
           ||||||||||||||||||||||||||||||||
Sbjct: 377 aagatggagttgagacctgtgtgcttcctgca 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no414_k01.g1 MSMg01no414_k01.g1 CHROMAT_FILE:
MSMg01no414_k01.g1 PHD_FILE: MSMg01no414_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:44 2005
         (171 letters)



>mm_chr2_154587323_154587892
          Length = 570

 Score =  315 bits (163), Expect = 8e-91
 Identities = 169/171 (98%), Gaps = 1/171 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcaagttactgcacctcagtgaactctcatctccttatttgtccagtgggagagatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcaagttactgcacctcagtgaactctcatctccttatttgtccagtgggagagatct 260

                                                                       
Query: 61  tgttttgaggactgggtaaggaaacttgtgggtggagccctcactaagcagcctggctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttttgaggactgggtaaggaaacttgtgggtggagccctcactaagcagcctggctcc 320

                                                              
Query: 121 tcgtaaccgatcgataacagcttctattatctttatacacaccattatcat 171
           |||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgtaacc-atcaataacagcttctattatctttatacacaccattatcat 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 570
Length adjustment: 8
Effective length of query: 163
Effective length of database: 562
Effective search space:    91606
Effective search space used:    91606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |