MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-414M19
Chromosome	2 (Build37)
Map Location	166,231,766 - 166,232,203
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2, LOC670775
Downstream gene	Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5
Link	Open Mouse BAC browser

Click to get alignment info.

name	Slc13a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114644 MGI:2149635
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2810408M09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381406 MGI:1918294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc2a10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170441 MGI:2156687
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eya2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14049 MGI:109341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkcbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228880 MGI:1918025
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC546780 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546780
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Ncoa3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17979 MGI:1276535
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sulf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72043 MGI:1919293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC670775 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670775
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Ppia-ps2_2197.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383773
definition	note : peptidyl-prolyl cis-trans isomerase A pseudogene 2_2197.1 pseudo : _no_value

name	BC067047 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:277360 MGI:3040696
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trp53rk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76367 MGI:1914050
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arfgef2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99371 MGI:2139354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 147 ESTs, 20 Proteins

name	LOC670802 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670802
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Cse1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110750 MGI:1339951
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stau1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20853 MGI:1338864
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC383774 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383774
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins pseudo : _no_value

name	Ddx27 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228889 MGI:2385884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI481105 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98999 MGI:2138982
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1500012F01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68949 MGI:1916199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668950 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 ESTs, 2 Proteins

name	Kcnb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16500 MGI:96666
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptgis (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19223 MGI:1097156
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668951 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668951
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	B4galt5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56336 MGI:1927169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc13a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892571 GeneID:114644 MGI:2149635
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 transcript_id : NM_054055.2

name	2810408M09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62510084 GeneID:381406 MGI:1918294
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810408M09 gene transcript_id : NM_001007581.1

name	Slc2a10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893061 GeneID:170441 MGI:2156687
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 2 (facilitated glucose transporter), member 10 transcript_id : NM_130451.2

name	Eya2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129931 GeneID:14049 MGI:109341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eyes absent 2 homolog (Drosophila) transcript_id : NM_010165.2

name	Prkcbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91064877 GeneID:228880 MGI:1918025
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C binding protein 1 transcript_id : NM_027230.3

name	Ncoa3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118026945 GeneID:17979 MGI:1276535
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor coactivator 3 transcript_id : NM_008679.2

name	Sulf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801751 GeneID:72043 MGI:1919293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sulfatase 2 transcript_id : NM_028072.4

name	LOC670775 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250258 GeneID:670775
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical LOC670775 transcript_id : XM_001481205.1

name	BC067047 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124517733 GeneID:277360 MGI:3040696
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC067047 transcript_id : NM_177782.3

name	Trp53rk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130623 GeneID:76367 MGI:1914050
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transformation related protein 53 regulating kinase transcript_id : NM_023815.4

name	Arfgef2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94367432 GeneID:99371 MGI:2139354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 147 ESTs, 20 Proteins product : ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) transcript_id : XM_130646.7

name	LOC670802 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250113 GeneID:670802
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical LOC670802 transcript_id : XM_001480821.1

name	Cse1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142356854 GeneID:110750 MGI:1339951
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chromosome segregation 1-like (S. cerevisiae) transcript_id : NM_023565.2

name	Stau1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130158 GeneID:20853 MGI:1338864
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : staufen (RNA binding protein) homolog 1 (Drosophila) transcript_id : NM_011490.2

name	Ddx27 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379510 GeneID:228889 MGI:2385884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 transcript_id : NM_153065.3

name	AI481105 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487310 GeneID:98999 MGI:2138982
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI481105 transcript_id : NM_001033196.2

name	1500012F01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487304 GeneID:68949 MGI:1916199
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1500012F01 gene transcript_id : NM_001081005.1

name	LOC668950 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250260 GeneID:668950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 ESTs, 2 Proteins product : similar to RPL17 protein transcript_id : XM_001005073.2

name	Kcnb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254348 GeneID:16500 MGI:96666
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium voltage gated channel, Shab-related subfamily, member 1 transcript_id : NM_008420.3

name	Ptgis (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802458 GeneID:19223 MGI:1097156
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prostaglandin I2 (prostacyclin) synthase transcript_id : NM_008968.3

name	B4galt5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116089305 GeneID:56336 MGI:1927169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 transcript_id : NM_019835.2

name	Slc13a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16905091 CCDS:CCDS17081.1 GeneID:114644 MGI:2149635
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0015362 - high affinity sodium:dicarboxylate symporter activity [Evidence IDA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006835 - dicarboxylic acid transport [Evidence IDA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 protein_id : NP_473396.1

name	2810408M09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62510085 CCDS:CCDS17082.1 GeneID:381406 MGI:1918294
definition	codon_start : 1 note : novel protein similar to Trp53 regulating kinase (Trp53rk) product : hypothetical protein LOC381406 protein_id : NP_001007582.1

name	Slc2a10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18485498 CCDS:CCDS17083.1 GeneID:170441 MGI:2156687
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS] GO_function : GO:0005355 - glucose transporter activity [Evidence ISS] GO_process : GO:0015758 - glucose transport [Evidence ISS] codon_start : 1 product : solute carrier family 2 member 10 protein_id : NP_569718.1

name	Eya2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859550 CCDS:CCDS17084.1 GeneID:14049 MGI:109341
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IDA] GO_process : GO:0008632 - apoptotic program [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA]; GO:0006470 - protein amino acid dephosphorylation [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : eyes absent 2 homolog protein_id : NP_034295.1

name	Prkcbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91064878 GeneID:228880 MGI:1918025
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : protein kinase C binding protein 1 protein_id : NP_081506.3

name	Ncoa3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118026946 GeneID:17979 MGI:1276535
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0003713 - transcription coactivator activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : nuclear receptor coactivator 3 protein_id : NP_032705.2

name	Sulf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61656167 CCDS:CCDS17086.1 GeneID:72043 MGI:1919293
definition	GO_component : GO:0009986 - cell surface [Evidence ISS]; GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005615 - extracellular space [Evidence ISS] GO_function : GO:0004065 - arylsulfatase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008449 - N-acetylglucosamine-6-sulfatase activity [Evidence ISS] GO_process : GO:0030201 - heparan sulfate proteoglycan metabolism [Evidence ISS]; GO:0006790 - sulfur metabolism [Evidence ISS] codon_start : 1 product : sulfatase 2 protein_id : NP_082348.2

name	LOC670775 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250259 GeneID:670775
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481255.1

name	BC067047 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124517734 GeneID:277360 MGI:3040696
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : SET domain containing 6 product : hypothetical protein LOC277360 protein_id : NP_808450.2

name	Trp53rk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560052 CCDS:CCDS17090.1 GeneID:76367 MGI:1914050
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence ISS] [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : TP53 regulating kinase; Trp53 regulating kinase product : Nori-2 protein protein_id : NP_076304.2

name	Arfgef2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82887368 GeneID:99371 MGI:2139354
definition	codon_start : 1 product : ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) protein_id : XP_130646.6

name	LOC670802 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250114 GeneID:670802
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480871.1

name	Cse1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963737 CCDS:CCDS17092.1 GeneID:110750 MGI:1339951
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008262 - importin-alpha export receptor activity [Evidence IEA]; GO:0008565 - protein transporter activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0008283 - cell proliferation [Evidence IEA]; GO:0000059 - protein import into nucleus, docking [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : chromosome segregation 1-like protein_id : NP_076054.1

name	Stau1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755674 CCDS:CCDS17093.1 GeneID:20853 MGI:1338864
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IDA] GO_function : GO:0003725 - double-stranded RNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IDA] GO_process : GO:0008298 - intracellular mRNA localization [Evidence IDA] codon_start : 1 note : staufen product : staufen (RNA binding protein) homolog 1 protein_id : NP_035620.1

name	Ddx27 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249330 GeneID:228889 MGI:2385884
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : RNA-helicase like protein; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 27 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 protein_id : NP_694705.2

name	AI481105 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487311 GeneID:98999 MGI:2138982
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : zinc finger, NFX1-type containing 1 protein_id : NP_001028368.2

name	1500012F01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487305 GeneID:68949 MGI:1916199
definition	codon_start : 1 product : hypothetical protein LOC68949 protein_id : NP_001074474.1

name	LOC668950 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250261 GeneID:668950
definition	codon_start : 1 product : similar to RPL17 protein protein_id : XP_001005073.2

name	Kcnb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560819 CCDS:CCDS17096.1 GeneID:16500 MGI:96666
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA] GO_function : GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence ISS] GO_process : GO:0006813 - potassium ion transport [Evidence IEA] [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : potassium voltage gated channel Shab-related subfamily member 1 product : potassium voltage gated channel, Shab-related subfamily, member 1 protein_id : NP_032446.2

name	Ptgis (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679535 CCDS:CCDS17097.1 GeneID:19223 MGI:1097156
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence IEA] GO_function : GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008116 - prostaglandin-I synthase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006633 - fatty acid biosynthesis [Evidence IEA]; GO:0008610 - lipid biosynthesis [Evidence IEA]; GO:0001516 - prostaglandin biosynthesis [Evidence IEA] codon_start : 1 note : prostacyclin synthase; prostaglandin I2 synthase product : prostaglandin I2 (prostacyclin) synthase protein_id : NP_032994.1

name	B4galt5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116089306 CCDS:CCDS17098.1 GeneID:56336 MGI:1927169
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA] codon_start : 1 note : beta-1,4-galactosyltransferase V; UDP-Gal:betaGlcNAc beta 1 4-galactosyltransferase polypeptide 5 product : UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 protein_id : NP_062809.2

name	LOC546780 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:546780
definition	number : 1 pseudo : _no_value

name	LOC668951 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668951
definition	number : 2 pseudo : _no_value

name	LOC668951 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668951
definition	number : 1 pseudo : _no_value

name	LOC383774 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250115 GeneID:383774
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins product : similar to GLE1 RNA export mediator-like (yeast pseudo : _no_value transcript_id : XR_034855.1

clone name	MSMg01-482M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384G23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-128L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265A17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-527O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-209B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070J12
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-414M19.T7 (MSMg01no414_m19.b1)	MSMg01-414M19.TJ (MSMg01no414_m19.g1)
ACC	AG511010	AG511011
length	789	810
length of high quality (start - end)	446 (49 - 494)	39 (94 - 132)
definition	CHROMAT_FILE: MSMg01no414_m19.b1 PHD_FILE: MSMg01no414_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:58 2005	CHROMAT_FILE: MSMg01no414_m19.g1 PHD_FILE: MSMg01no414_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:58 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NNNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG CGGAATTCCACAGCTCCTCCGCTGAGTGGTCTGTGAGCCCTTCTGTGACC ACTGCGGAGGGCAGGGCGTGCCAGAAGTCAGTGTAGTGGGAGGCAGCTAA CACCGCCTGCTGAAAACACAGATGAGATGACAGTTTGCCTGGTCATGTCA CTACCCACCCACCGTTCTCTTCTGAATGAGCTCAGGGATGTTGGAGCCTG TGGCCGGGCCAGTGGCACCACAGACGTGCTTATAATGGCATGTGGAGCAG CGGAGAGCATTAGCATTGCCACACCTCTCTGTGTTTCAGGCAGAGCTGTG GACCTTGGGTGCACAGGAGTTTTCTCAAGGGGAGAATCAGGTTCAGCCAC CAGTGCAAACCCACTGCAGGCTCTCTGGCCCCGCACCTGCTTTGACAGCC CCTTCTGGAAGCTCACATCAAAGATGTCATGGTAATTAAATAAGAGCTTG TGCAGAGACCCCATGCTGGACTCAGGTTTCCTCCCAATTGGGTTTGCACA AACTAGGGGCTCCCCATTTGAACTCCTGGGGCCCCGGGTTCTTCTTCTTA AAAAGGTGCCGGCCCCCTCAAAACCGCTCGCCCTCTCTGGTAGGAGTTGT AATGTTTTTCCTTTATTATCCCTTTTTTCCTCTAATCTCTTCTCCGGACT TTCCTATGCTCAACTTGTGTTCTCTTTCCTCCGCTTGACAATTACCACCT CTATCTCTTTATCCATCATTTTGTTTCTTTTATACTAAA	NNNNCCGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXATTTCCGCGAAAATCTGTGNNCAGTGAGTAAGCCCT CCCTTCCTGCCCCGAGTCGAGCTGCTCAAAGCCACGCTGGCTCTCCTCCG CTGCCAGNCAGCANCCAAAGTGAACAGTCTCGGTAGCNNNNNNNNCTCAC GNCCCAACCCGAAAATCAAAAACAGTCTTTGGAGGNNAATGGAAAAAAGG AANGGGGTGAAACNNCAANTAAACTGGTTTTTTAAACNNTTTTTTTTGNA AAAANNTTAAGAAAGAGGAGGAATGAATTGGTGGGAAGGGAGGAGGGGGA GAGGCAGGGGACGAAGAGGGTAGGAGGAGTGTGGAAAAGGGGAGAAGGGG AGAAGGGGGAGGTTGAGGGGAGAGCGGAGGAAGGGAGGGGAAAGAAGAAG GGAGGAGGAGAGAAGGCAAGGGGAAAGAAGGGGTGGGTGGGAAGATGGAG GGAAGGAGAGGAGGGAGGGGGAGAGAGAGAGGAAGGAGGAGGAGAAGGGG TGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGNN GCAGTAGATG
quality values	Open. Hide. 0 0 0 3 7 7 8 8 9 12 17 17 21 34 32 30 30 25 24 17 22 19 22 22 26 28 28 44 27 21 11 10 10 22 19 23 9 9 9 17 9 11 11 9 10 10 15 15 20 27 37 48 36 36 36 36 50 50 36 36 31 31 23 21 12 19 19 10 11 8 8 8 17 27 37 36 36 37 37 37 41 53 53 53 53 53 50 50 57 59 57 57 57 57 57 53 53 53 50 50 68 43 47 50 50 43 43 47 51 68 68 68 57 53 50 57 57 57 57 54 48 48 48 48 48 57 57 57 57 57 57 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 57 57 68 68 68 68 68 68 68 68 68 68 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 59 52 57 50 50 50 51 51 68 68 68 68 68 68 68 68 68 68 59 68 68 68 59 59 59 44 35 42 42 44 47 44 47 48 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 57 57 68 68 68 57 59 59 59 59 68 68 68 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 30 32 21 22 17 18 12 11 9 11 11 12 24 30 36 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 57 57 57 68 48 48 48 48 43 46 46 46 43 39 39 39 32 42 47 48 59 59 44 44 48 43 43 41 47 47 59 46 47 46 59 46 48 48 48 46 46 41 43 43 43 41 31 31 35 37 41 41 39 37 30 30 37 39 48 59 59 47 47 39 34 30 34 32 37 44 59 47 43 35 31 31 39 36 36 47 59 39 40 40 39 39 33 31 25 33 34 47 43 43 39 36 34 37 37 37 37 35 37 36 43 37 33 22 22 24 24 28 33 39 39 39 35 37 15 16 12 15 10 13 18 30 25 25 30 21 23 16 16 11 19 17 21 22 11 11 17 11 12 12 8 11 8 9 9 9 10 15 23 20 20 20 32 28 30 24 23 15 14 12 18 10 9 9 13 14 12 12 8 8 8 8 9 9 10 20 21 22 22 22 18 10 10 10 10 11 11 12 12 10 8 8 8 8 8 8 8 8 10 8 8 8 9 13 12 7 9 12 12 14 12 12 7 8 12 7 6 8 8 7 7 8 8 10 10 8 8 8 8 8 9 6 10 7 6 10 6 8 8 8 8 8 8 10 9 12 12 12 9 10 9 9 9 9 11 13 11 9 9 9 8 10 10 8 8 8 8 10 8 9 9 13 8 6 6 6 8 6 9 10 8 10 6 6 6 7 10 8 10 8 8 8 10 8 8 10 8 8 6 6 8 8 9 10 12 11 15 15 19 24 21 20 13 10 8 8 6 6 8 8 8 8 8 16 14 11 12 8 8 8 8 10 10 10 10 8 8 9 9 10 13 15 10 9 10 10 9 8 8 10 8 8 9 10 11 12 15 15 12 8 8 6 6 8 8 9 9 10 8 8 6 6 6 6 8 8 8 8 6 7 8 8 8 8 8 9 8 8 8 8 10 12 12 8 8 8 10 8 9 9 9 13 13 13 10 10 9 9 8 10 8 8 8 10 8 11 8 9 8 8 9 9 9 9	Open. Hide. 0 0 0 0 3 6 6 8 15 15 10 8 6 8 8 3 0 3 3 0 0 3 7 7 9 7 7 3 0 3 17 8 3 0 3 8 6 6 6 6 6 7 7 7 7 10 11 21 21 33 37 37 44 37 37 37 23 23 12 11 3 0 3 7 7 6 6 11 19 14 24 18 14 8 9 7 7 10 21 21 21 21 3 0 0 3 12 23 23 23 23 9 9 9 23 27 44 44 47 59 59 59 59 59 47 47 44 44 44 41 41 39 39 39 41 42 37 33 33 33 33 33 42 47 37 24 18 9 9 9 9 15 26 30 21 21 9 8 8 10 17 23 23 37 37 37 32 28 35 37 29 24 22 19 12 17 3 0 3 9 9 18 3 0 3 6 7 6 7 15 15 9 7 7 6 8 9 9 9 9 10 10 11 17 13 10 3 0 0 0 0 0 0 0 0 3 8 13 12 15 3 0 3 6 6 6 9 10 18 8 8 8 8 8 9 12 12 17 9 9 9 9 7 6 8 9 9 10 10 9 8 6 6 6 3 0 0 3 9 10 10 16 14 9 9 8 7 7 8 6 6 3 0 3 6 6 6 8 8 8 8 8 3 0 0 3 7 3 0 3 8 7 7 8 10 9 10 9 9 10 15 8 10 10 8 6 3 0 0 3 8 8 8 8 8 13 11 3 0 3 7 6 6 3 0 0 3 8 6 6 8 8 6 6 7 8 6 6 6 6 6 6 6 6 6 6 6 6 6 8 8 10 9 12 9 9 9 9 10 10 10 8 10 8 8 8 8 8 8 8 8 8 8 7 7 7 8 8 7 6 6 6 6 6 6 6 10 10 8 8 8 8 8 8 8 10 8 8 7 7 7 8 9 11 10 6 6 7 6 7 7 9 9 8 6 6 6 7 7 6 6 6 6 6 6 6 6 6 7 6 6 6 6 7 7 8 8 8 8 8 8 6 6 6 6 6 8 8 8 6 6 6 6 10 6 6 6 7 7 8 6 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 6 7 6 7 6 6 6 6 6 6 6 9 8 8 8 8 6 8 8 6 6 6 12 10 9 9 9 16 10 10 10 10 10 10 8 8 6 6 6 6 6 6 7 7 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 7 6 6 6 8 6 8 8 8 8 8 8 6 6 6 9 6 6 6 6 6 6 6 8 8 8 8 8 10 10 9 21 19 19 10 10 9 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 0 3 6 6 6 6 6 6 6 3 3

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no414_m19.b1 MSMg01no414_m19.b1 CHROMAT_FILE:
MSMg01no414_m19.b1 PHD_FILE: MSMg01no414_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:58 2005
         (446 letters)



>mm_chr2_166231562_166232407
          Length = 846

 Score =  777 bits (402), Expect = 0.0
 Identities = 429/438 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacagctcctccgctgagtggtctgtgagcccttctgtgaccactgcggagggc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagctcctcagctgagtggtctgtgagcccttctgtgaccactgcggagggc 264

                                                                       
Query: 65  agggcgtgccagaagtcagtgtagtgggaggcagctaacaccgcctgctgaaaacacaga 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 agggcgtgccagaagtcagtgtagtggaaggcagctaacaccgcctgctgaaaacacaga 324

                                                                       
Query: 125 tgagatgacagtttgcctggtcatgtcactacccacccaccgttctcttctgaatgagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagatgacagtttgcctggtcatgtcactacccacccaccgttctcttctgaatgagct 384

                                                                       
Query: 185 cagggatgttggagcctgtggccgggccagtggcaccacagacgtgcttataatggcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct: 385 cagggatgttggagcctgtggccgggccagtggcaccacagacgtgcttgtaatagcttg 444

                                                                       
Query: 245 tggagcagcggagagcattagcattgccacacctctctgtgtttcaggcagagctgtgga 304
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 445 tggagcagcggagagcattagcattgccacacctctctgtgggccaggcagagctgtgga 504

                                                                       
Query: 305 ccttgggtgcacaggagttttctcaaggggagaatcaggttcagccaccagtgcaaaccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccttgggtgcacaggagttttctcaaggggagaatcaggttcagccaccagtgcaaaccc 564

                                                                       
Query: 365 actgcaggctctctggccccgcacctgctttgacagccccttctggaagctcacatcaaa 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 actgcaggctctctggccccgcacctgctttgacagccccttctggaagctcacatcaga 624

                             
Query: 425 gatgtcatggtaattaaa 442
           ||||||||||||||||||
Sbjct: 625 gatgtcatggtaattaaa 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information