BAC Information

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BAC

Clone NameMSMg01-415G20
Chromosome2 (Build37)
Map Location 87,828,110 - 87,828,635
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74
Downstream geneOlfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415G20.T7 (MSMg01no415_g20.b1)MSMg01-415G20.TJ (MSMg01no415_g20.g1)
ACCAG511489AG511490
length740741
length of high quality
(start - end)		528 (38 - 565)465 (69 - 533)
definitionCHROMAT_FILE: MSMg01no415_g20.b1 PHD_FILE: MSMg01no415_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:49 2005CHROMAT_FILE: MSMg01no415_g20.g1 PHD_FILE: MSMg01no415_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
AAGCTCCATATGGAATGATGCAACAAATGTTTGTCTTGGAAATGCCTCAA
AGATAATCACTTTGACTTTCCAAATATTAGACTATATAAAACATAATAAT
ATTTATTAACCCCCTGATTTAAATAACCAGAATAGTTTTTCAGATGGCAC
TGAGAATATTATGTGCAAAAAGAGTAGTAGAATGAACTGAAATAGCATAT
TTATTGATATAAAAATATATCAATATACCAATAAATATAATTGCAATAAA
TAAAATGAGTATATTTCCATTCTTTATGATTAGACTTTTAAAATAAAACT
GTGGAAAGAGAACAAACTATGAATGAAATATATTTATTATATCTACACTG
ACTGAAATTCTAACTACTTAAGGCAACACAATTTTCTAAAGTCTTCATTC
ATAAACACCCATACTTTGGAATATTTTGTTTCAGTTCCAAAATTTTGATT
TTATTTGGAAAGTAGGAAATGCATCAAGCATGGAACAGCGACAGATAGAG
GTACGTTAGTTTACCAATTTGTCTTTCTAATTACCTACATTAAATGTGAA
CTANNAGGAATGAATATTTTACAAAAGTATATAGATAATCAAGTTCACCT
CTATGTATCAAAAAATGAATGAAACCTTATTGGGCTTCAAATGTCTGGGC
GGTGTAACCTTGGGGGTCTGAAAATTTTCCTAAAGGGCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTATGTATTGGATATTAGCTCTCTATCAA
ATGGATATAGGGTTGGTAAGGTCTTTTCCTTGCGGTTGTGTCTTATTGTC
AGAGTCTTTTGCCTTACAGAAAGTGTTTCAATTTTATGAGATCCTATTTG
TCTATAGTTGATCTTAGAGTCTGAGCCACTCACACACTATATGAAGCTCA
AGAAGGAAGACTAAAGTGTTGATTCTTCAGTCCTACTTAGATTGGTAACA
AAATAATCACAGGGTCTAGAGGGAGGGAGGAACCTGGGAGGGAGAAAAGA
GGGGAAGGGAAAAGGGGGCAGGATCAAGTGTGGGAGAAGACTCAGGAGAA
ATACAGGGGGTCAGGAAATTGAATGGAGGTATGTAGCAGCAGGNGATGGA
AAACTGGAAGTTGCCACTAGAAATTCCCAGGTGCCAGAAAAACAAGAGGC
TTCCAGAATCCAACCTGATGATGTTAGCTGAAATACCCACAAAAGGGGAA
AAAAAACTGTAAAAACGATATCAAGAATTTAGGAACAGCCTCTGTTTGAG
GGAGGGCGCCTCCCTCCCTTCTCCTACTATTATCCCCGAAATGCTCCTTT
CTAGAACATGCCGGGACTATCCCCGCATTTATTACTGCAGTTACCGCTCC
TCCTCAAATTTGCCCCCCCCATGTACCTCTTCTTCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_g20.b1 MSMg01no415_g20.b1 CHROMAT_FILE:
MSMg01no415_g20.b1 PHD_FILE: MSMg01no415_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:49 2005
         (528 letters)



>mm_chr2_87827907_87828835
          Length = 929

 Score =  909 bits (470), Expect = 0.0
 Identities = 512/526 (97%), Gaps = 1/526 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattaagctccatatggaatgatgcaacaaatgtttgtcttggaaatgcctcaa 63
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggaattcattaagcaaaatatggaatgatgcaacaaatgtttgtcttggaaatgcctcaa 670

                                                                       
Query: 64  agataatcactttgactttccaaatattagactatataaaacataataatatttattaac 123
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 669 agataatcactttgactttccaaatattagactatataaaacataataacgtttattaac 610

                                                                       
Query: 124 cccctgatttaaataaccagaatagtttttcagatggcactgagaatattatgtgcaaaa 183
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 609 cccctgatttaaataaacagaatagtttttcagatggcactgagaatattatgtccaaaa 550

                                                                       
Query: 184 agagtagtagaatgaactgaaatagcatatttattgatataaaaatatatcaatatacca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 549 agagtagtagaatgaactgaaatagcatatttattgatataaaaatatatcaatatatca 490

                                                                       
Query: 244 ataaatataattgcaataaataaaatgagtatatttccattctttatgattagactttta 303
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 489 ataaatataattgcaataaataaaatgagtatatttccattctttataattagactttta 430

                                                                       
Query: 304 aaataaaactgtggaaagagaacaaactatgaatgaaatatatttattatatctacactg 363
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 429 aaataaaactgtggaaagaaaacaaactatgaataaaatatatttattatatctacactg 370

                                                                       
Query: 364 a-ctgaaattctaactacttaaggcaacacaattttctaaagtcttcattcataaacacc 422
           | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 369 aactgaaattctaactacttaaagcaacacaattttctaaagtcttcattcataaacacc 310

                                                                       
Query: 423 catactttggaatattttgtttcagttccaaaattttgattttatttggaaagtaggaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 catactttggaatattttgtttcagttccaaaattttgattttatttggaaagtaggaaa 250

                                                         
Query: 483 tgcatcaagcatggaacagcgacagatagaggtacgttagtttacc 528
           ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 249 tgcatcaagcatggaacagcgacagatagaggtactttagtttacc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space:   476042
Effective search space used:   476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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