BAC Information

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BAC

Clone NameMSMg01-416C07
Chromosome2 (Build37)
Map Location 170,415,685 - 170,416,139
singlet/doubletsinglet
Overlap gene4930470P17Rik
Upstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4
Downstream geneDok5, LOC668955, LOC100043743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416C07.T7 (MSMg01no416_c07.b1)MSMg01-416C07.TJ (MSMg01no416_c07.g1)
ACCAG512031AG512032
length725808
length of high quality
(start - end)
244 (48 - 291)455 (124 - 578)
definitionCHROMAT_FILE: MSMg01no416_c07.b1 PHD_FILE: MSMg01no416_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:42 2005CHROMAT_FILE: MSMg01no416_c07.g1 PHD_FILE: MSMg01no416_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCCTATATTCAGAGAATCCGCGGAATTCAAGCAGATTTCCCACATGAA
TGTATTCAACAAATCTGAATCAGGTACCTGCTAGATATTAGACACCGTCT
AGGTACAAGGAATATAAATATAAATAAAATCGAGAGAATGTAATGCATCG
ATTTGGCTTCTAGTTAATGTGGCCCATACGTCTGTGTGAGCATGTATGTG
CATGGATTCGTATATTCATCTTATACTCTACAAACAACACAGCCTGAGGG
GTTAGGGGCTATGAAGGAATAGGAGAGTTGGCTAGCGGCAGGTACCTAGT
CTGTAAACAGTTGTCCCCTTAGGGGAAGGCAATAGCTGGAAAGAAGCTGG
CAGAGATGATGGTATCAATGGGTGTGGGGGGTGCGGGGTGGGAGTAGGTG
GACGTATCTGTCTTAGCCTATATAGCATAGTTATTAACTGTGAATATGAC
ACATGTACGATGCTGAGCATGTGNTACGCTGTGCAACCCTGTTTGTCCTC
CCCTTTACGCCTATGCCTTTCTCTGTAATAATTTTTTTTATCTTCTTCAT
CTTGCTTGTTGACATATTCCTTCTTGTTTTCTGCTTCCTTTATATGTTTC
AACTGTTTTTCTCTTTCTACTAACTTTAACTTTATTTTTTTTCATCATTT
TCGATAATTATATCTAATCTGTTCTCTTCCCATTTGTATTCAACTATCTT
TATTTCCCTCTATCCTTCTTCCCAG
GGGAGGATGGAGGAGGAGAGTAGGATGAGAGAGNNNGNNNGAGGGGGNTN
CCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATTTGAGCTGAAGTCACAAAAAAGTA
GATGTCACTGTCTCTATTTAGCCCATATCAGTAGGTTCAGCATAGGGTTG
ACGGTGTCTCTGGGGGAGACTTGGAGCAGTAAAGGTCAAGGTCTCAGATG
CAGCTGGAGGGAGGGTTTCTGAAGCGAGTCCAGGAAAGCAACCAAGAGAC
CACTGTGTGCACACAATGTGCGCACAGGGAGTGACAAATGCAGAAATGGT
CATTACCACAGCTGTTTGTCACATTTGAGAAAACAAGACAACCTCATTTC
TTATCAACAGGGAGACTATTGAGTAAACCATGATCCATTCACAGCCGAAT
AAACCTCATCAAATTTATGTAAGTCCTACACTCATAGCAAGATAGAGTAC
AGTACGGCCACTGAGGGGAAACCACTCACGCACACACACTTGCACACGCA
CATGCTCACACACGCACTGCTTGTTTCCTCATAAAAAAGAGAGAATCTTA
TATACAGGGCATAAGAGCACTAACCCTAAAAGCTTCGAGCAGCAGTAACG
GTTTCTCTGTAGGGACATATAAGGCATGTGGAAATATTGGAATGATACAA
AAGGCTATTTCCCTCTTAAAAATCTCTAAGAGTTAAAGAAACCCCANAAG
GCATTTAATCTACCCATTTATATTCCTTGGTCGGCCTTGTTAAATCTGTC
TGGAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_c07.g1 MSMg01no416_c07.g1 CHROMAT_FILE:
MSMg01no416_c07.g1 PHD_FILE: MSMg01no416_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:42 2005
         (455 letters)



>mm_chr2_170415485_170416334
          Length = 850

 Score =  716 bits (370), Expect = 0.0
 Identities = 433/460 (94%), Gaps = 13/460 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttgagctgaagtcacaaaaaagtagatgtcactgtctctatttagcccatatcagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttgagctgaagtcacaaaaaagtagatgtcactgtctctatttagcccatatcagta 260

                                                                       
Query: 61  ggttcagcatagggttgacggtgtctctgggggagacttggagcagtaaaggtcaaggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttcagcatagggttgacggtgtctctgggggagacttggagcagtaaaggtcaaggtc 320

                                                                       
Query: 121 tcagatgcagctggagggagggtttctgaagcgagtccaggaaagcaaccaagagaccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagatgcagctggagggagggtttctgaagcgagtccaggaaagcaaccaagagaccac 380

                                                                       
Query: 181 tgtgtgcacacaatgtgcgcacagggagtgacaaatgcagaaatggtcattaccacagct 240
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tgtgtgcacacattgtgcgcacagggagtgacaaatgcagaaacggtcattaccacagct 440

                                                                       
Query: 241 gtttgtcacatttgagaaaacaagacaacctcatttcttatcaacagggagactattgag 300
           ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gtttgtcacagctgagaaagcaagacaacctcatttcttatcaacagggagactactgag 500

                                                                       
Query: 301 taaaccatgatccattcacagccgaataaacctcatcaaatttatgtaagtcctacactc 360
           ||||||||||||||||||||||||||||| |||| |||||| || | |||||||||||||
Sbjct: 501 taaaccatgatccattcacagccgaataagcctcgtcaaatctacgcaagtcctacactc 560

                                                                       
Query: 361 atagcaagatagagtacagtacggccactgaggggaaaccactcacgcacacacacttgc 420
           |||||||||||   ||  |||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 561 atagcaagata---ta--gtacggccactgaggggaaaccgctcacgcacacacacatgc 615

                                                   
Query: 421 acac--gcacatgc------tcacacacgcactgcttgtt 452
           ||||  ||||||||      ||||||| ||||||||||||
Sbjct: 616 acacatgcacatgcagatgctcacacatgcactgcttgtt 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 850
Length adjustment: 10
Effective length of query: 445
Effective length of database: 840
Effective search space:   373800
Effective search space used:   373800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)