BAC Information

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BAC

Clone NameMSMg01-417D07
Chromosome2 (Build37)
Map Location 31,098,516 - 31,098,766
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107
Downstream geneFreq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417D07.T7 (MSMg01no417_d07.b1)MSMg01-417D07.TJ (MSMg01no417_d07.g1)
ACCAG512841AG512842
length739749
length of high quality
(start - end)
251 (69 - 319)377 (75 - 451)
definitionCHROMAT_FILE: MSMg01no417_d07.b1 PHD_FILE: MSMg01no417_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:01 2005CHROMAT_FILE: MSMg01no417_d07.g1 PHD_FILE: MSMg01no417_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCG
GAATTCAGATTTTTGCCCCCTGTGAGTGTGAGGTGGGCATGGCAGCCTGC
CTGTACTTCTAGCCCTTGGCAAGATGGCTAGCTGGCTAGGCATGCGTATA
CACACCCCACACATACATGTTGGGGGCTGGAAGCCAGGCATGGTGGTGGA
CACGTCTCATTCCAGGGCTGGGGAAGGCAGAGACAGGCTTAGCCTAGTTG
GAGCCCATGTCCCAGTGGCAGTCCCTGTCTCAAAAGAACAATGTGAGTGG
CTCCTGAGAAATGACACCTGATTTCAGCCTCTGATTTCACATACACATGC
ATGTGCCTGCCCACACACCTGTACACACACATACTCATTTTTTTTAAAGA
CACCAATGCTGGCTCACAACCATTCGTAACTCCAGTCCTAGAGGATCCGA
TGTCTTCTCCTAACCTCCAAGGGCACCAGGTGCGCACATGGGGTACATAA
ATACACGCAAGACATACATTCACATAATATAACACAATAAATACCCCTAA
AGAACTCTGAATGCTTAAAAACTCACCTCTGTGAGCCATTTTTTACCGTC
CCGTACTAACTACAGACTGCCGTGAGAGTCTTATTAGGCACACTCCCCCC
CCTTTTCCACTTTCTCCACCGCCTTCTGCCATGTCTCTGAATGTTGTTCT
TGATTTTTTGCCGATTTATAGCCCGTTTCCCCCCTTTGT
CCTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCGCGAAATTCAGGGCCCGGCTGGCAGCCAGCAAG
CCCCGTAACCTTCGAGTCTCCAGTCCTTGCAGCTCTGGAATTATCGATGT
AGACGGTCACGATCAGCTATTTCTGTGGGTGCCAGGGATTTGAACTCGTA
TCCTCATGCTTGGCCAACAGGCACGCTTATCTACTGAGGCATCCCCAAAG
CCCCTAGTCCAAGGTTCTTTCTCTATAAACCCTTCCAAACCTCTTGCCTT
GGGATAGGCTTTCCAGCCTTGTATTATTTTGTTTTTTTTTTTTTTAAAAC
ACGCACGCAGGGAATCCCTCAGAACACTGCCTTTACGTTTTCTGGATCTG
CTGAGGAACCCAGTGTGTTTCCTATACTCATCCAGCTCTTTGGGTAGACG
AACAAGTGGAGAGGAAAATATGAGTTCCCGAGGCTGCTGGCTCTGATCTG
GCCGACCTTGTGATCCACGGGGACTTTTACAGCATATACTTGGCCCCTTT
TCCAGGTGTCCTGTACCACAACGTCTACGGTGTATCCTAGGATTGTCCGG
ATCTGTTCTTTTATTCTCCTGAACAGCTATCTCGAAACATCTGAATTCCC
GTGTCCTTTTCGCGCTCTTGTGTTCCCCCTTTTTTCTTACGCTTCCCCCT
TTTTCTGTTTCACCATATTTTCCCTTTTATGTTCCTCTTTGATTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_d07.b1 MSMg01no417_d07.b1 CHROMAT_FILE:
MSMg01no417_d07.b1 PHD_FILE: MSMg01no417_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:01 2005
         (251 letters)



>mm_chr2_31098455_31099105
          Length = 651

 Score =  485 bits (251), Expect = e-142
 Identities = 251/251 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgtgagtgtgaggtgggcatggcagcctgcctgtacttctagcccttggcaagatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cctgtgagtgtgaggtgggcatggcagcctgcctgtacttctagcccttggcaagatggc 253

                                                                       
Query: 61  tagctggctaggcatgcgtatacacaccccacacatacatgttgggggctggaagccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tagctggctaggcatgcgtatacacaccccacacatacatgttgggggctggaagccagg 193

                                                                       
Query: 121 catggtggtggacacgtctcattccagggctggggaaggcagagacaggcttagcctagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 catggtggtggacacgtctcattccagggctggggaaggcagagacaggcttagcctagt 133

                                                                       
Query: 181 tggagcccatgtcccagtggcagtccctgtctcaaaagaacaatgtgagtggctcctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tggagcccatgtcccagtggcagtccctgtctcaaaagaacaatgtgagtggctcctgag 73

                      
Query: 241 aaatgacacct 251
           |||||||||||
Sbjct: 72  aaatgacacct 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)