Query= MSMg01no417_d15.b1 MSMg01no417_d15.b1 CHROMAT_FILE:
MSMg01no417_d15.b1 PHD_FILE: MSMg01no417_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:03 2005
(530 letters)
>mm_chr2_80306946_80307875
Length = 930
Score = 936 bits (484), Expect = 0.0
Identities = 507/526 (96%), Gaps = 18/526 (3%)
Strand = Plus / Minus
Query: 5 gaattcaagagttacagccagtctcagctacatagtaggtttgagcagcctggagtaaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 gaattcaagagttacagccagtctcagctacatagtaggtttgagcagcctggagtaaag 843
Query: 65 gagggttatgttttaaaataacaaccaaatcataaaccacacgcacacagacatagagat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gagggttatgttttaaaataacaaccaaatcataaaccacacgcacacagacat------ 789
Query: 125 acacacaggcacagagatacacacaggcacagagatacacacaggcacagagatacacac 184
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ------------agagatacacacaggcacagagatacacacaggcacagagatacacac 741
Query: 185 aagcacacgctctctgtaagtagccatttttcttaatgaaccctttgacttaagtcatga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagcacacgctctctgtaagtagccatttttcttaatgaaccctttgacttaagtcatga 681
Query: 245 ggatttcgggtcacttctgtgacctccctgcccccgccatctcctgcatccacagggcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggatttcgggtcacttctgtgacctccctgcccccgccatctcctgcatccacagggcct 621
Query: 305 ccttgccattcctccaatctggcacacatccaatcacctcaggccctatttgcttcctgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccttgccattcctccaatctggcacacatccaatcacctcaggccctatttgcttcctgg 561
Query: 365 tctggaactctcctctctaaggcaccttcaaggccttcaggtttccactcaaccgtcttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctggaactctcctctctaaggcaccttcaaggccttcaggtttccactcaaccgtcttg 501
Query: 425 caaagaccactccagcagaaatcagggaaggaagcacactttgttggaagagaaattatt 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caaagcccactccagcagaaatcagggaaggaagcacactttgttggaagagaaattatt 441
Query: 485 gactctttttaataggatgtgggaatagccagttctttgaggtacg 530
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gactctttttaataggatgtgggaatagccagttctttgaggtacg 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_d15.g1 MSMg01no417_d15.g1 CHROMAT_FILE:
MSMg01no417_d15.g1 PHD_FILE: MSMg01no417_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:03 2005
(510 letters)
>mm_chr2_80115304_80116213
Length = 910
Score = 891 bits (461), Expect = 0.0
Identities = 496/510 (97%), Gaps = 4/510 (0%)
Strand = Plus / Plus
Query: 1 ttagaaagaacggcttatttgacctaagtagctcaataggggcagctcttgaacatccag 60
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaaggaacggcttatttggcctaagtagctcaataggggcagctcttgaacatccag 260
Query: 61 ccatggttgtagcttctcgctatgcttataggtctaccctgatatgaacagtctccatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ccatggttgtagcttctcgctatgcttataggtctaccctgatatgaacagcctccatca 320
Query: 121 tccattcccatcctggtgaactgagcccctccctctgccttccatttcccactatgagaa 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tccattcccatcctggtgaactgagcccctctctctgccttccatttcccactatgagaa 380
Query: 181 actgaagtccaccaaaactgtgagccaagagaaagctttgcctcctcaagttgtctctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgaagtccaccaaaactgtgagccaagagaaagctttgcctcctcaagttgtctctgg 440
Query: 241 aattttgatcacagagacatgaaaggaatgactaacaagcccatcaaaaaccgggtagac 300
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 441 aattttgatcacagagacatgaaaggaatgacgaacaagcctatcaaaaaccgggtagac 500
Query: 301 gcttctcagaaactttgcttgtcaccttgtgcataagcagcagtcttttattgtcagtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttctcagaaactttgcttgtcaccttgtgcataagcagcagtcttttattgtcagtct 560
Query: 361 ttcgtggtgtatcagcccaagtgtgatgcttggttggaaagagtgcctggttttcttcta 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcgtggtgcatcagcccaagtgtgatgcttggttggaaagagtgcctggttttcttcta 620
Query: 421 agtgtctgcatgtgtgttttgctgctgtttcccatgcactctttattaaatatgttaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgtctgcatgtgtgttttgctgctgtttcccatgcactctttattaaatatgttaa-- 678
Query: 481 aaatacatttattanataaggcatatatgg 510
|||||||||||| |||||||||||||||
Sbjct: 679 --atacatttattaaataaggcatatatgg 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
