BAC Information

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BAC

Clone NameMSMg01-417E11
Chromosome2 (Build37)
Map Location 142,397,399 - 142,518,184
singlet/doubletdoublet
Overlap geneLOC668914, Kif16b
Upstream geneLOC668913
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417E11.T7 (MSMg01no417_e11.b1)MSMg01-417E11.TJ (MSMg01no417_e11.g1)
ACCAG512897AG512898
length766745
length of high quality
(start - end)
357 (70 - 426)499 (76 - 574)
definitionCHROMAT_FILE: MSMg01no417_e11.b1 PHD_FILE: MSMg01no417_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:07 2005CHROMAT_FILE: MSMg01no417_e11.g1 PHD_FILE: MSMg01no417_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:07 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(142,397,399 - 142,397,755)(142,517,686 - 142,518,184)
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCAAAGAGGATCCG
CGGAATTCTTTTTTTCCATTTCCCGATTCTTCATGTATTCAAACTAAAAC
TCATCTCATTACCCCCAAGAGTCAGAGTTTCTGCTTCTCACAATTATTCA
TCTCTTTGGTGTATTTGGGACAGGTGGCCAAGCCTAGTATGTTGGCACTT
ACAGAAGATGGACTCTTGCCCCCAAACCTTAATGACAAACAGAAGCATTG
AATTCTATAGTTATTTTGCTAATTAAAACAAATATTGGGATTATGTGACA
GATTTAATGTAGAGTGTGATTTAAAATGGGTAGCAGGGGATCCCCAGGGA
CTCTGGATTAAGCTGCAGATGGATAGAGAGAGGTTTTTGGCTCCTTGGTA
GGAGAATAAGGGAGGGAAGCTAGCCAGAGAGAGGTGTTAGGGACTCTGGA
GGAGACCTCCGCCTACAATCACAGGGCGCAGAATGGCCATTGAACTGTTC
AGACAGCTCTGTGCCCCTGAGGAACTTCACCATGGTGAGCAATGATTGCT
GCATCATCCTGAACATAGCATATAAAGTTTTCCTCCGCGCTATAAGCCTC
ACCTCTGCTCGCGGACCATTTCTTGACCATTACCTCTTCCTAATTCCCCT
TCCCATTGGTCTTTTTTGACCTTCGTCATTGTTCTTCCAATTTCGGCTTT
CTGTGTCTTTCTACACCCTGCCAGGTTTTTTTTTTTTGTATCCCCAAATT
ACTTCTCCCCTTTACA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATAGTGGCAGTTTCTATCTGCCAA
GGTTATAACCAGCACAGGCATTTCTCAGCCTACACATAGGCTCACAGCCT
ACACATAAGTACAAACATGATCGTCCATGTGACATAGAAGGGAGAAAGGG
AAGCAAAGCAGGACCCTTAAGGCTAAATATGGCATACTGTTAATCAGTAA
ACCTGTTCTTATAGACAGACTAACTAAATTCTTTTTTCTCCTCGTTTTCA
TCTTTAGCTGTATTTTATGTCAGGGAAGATCTATATTTAAAGTAATTTGG
GCATGGACTCTCAGTGAATTGATGTGATTAGCAGAGCTCATATTGAAAAA
CATCTCTAAGCATTTCCATGTTGGTTTTTGACATTATGACAGCTAATTAG
AAATGCCATGTGGCAAACAGTGGTTCTTGTTTTGGGTGACCACCCACTAG
GGAAAAATCATGATGCTGTAAAAAGGCTTTGGTAACTTCAGACACTGCCA
GACATTGACTCTGTCAGCTAGATTAGAAACTATAGTCATAAGTTGTTTAT
CTCTGTGACAGCCTATGGTCTGAGTTGTCACACAGGCTGACAGGTAGGGC
CAAAGCTGGGACTACCTGCCTGAGCTCCAGATTCCTCTTTTCCCCAGGAG
AACTGCAACGTATTGCCCTGCGGTCTCTTTTCTGTCAAAAATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_e11.b1 MSMg01no417_e11.b1 CHROMAT_FILE:
MSMg01no417_e11.b1 PHD_FILE: MSMg01no417_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:07 2005
         (357 letters)



>mm_chr2_142397199_142397955
          Length = 757

 Score =  629 bits (325), Expect = 0.0
 Identities = 349/357 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccgattcttcatgtattcaaactaaaactcatctcattacccccaagagtcagagtt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 201 ttcccgattcttcatgtattcaaaccaaaactcatctcattacccccaagagtcacagtt 260

                                                                       
Query: 61  tctgcttctcacaattattcatctctttggtgtatttgggacaggtggccaagcctagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgcttctcacaattattcatctctttggtgtatttgggacaggtggccaagcctagta 320

                                                                       
Query: 121 tgttggcacttacagaagatggactcttgcccccaaaccttaatgacaaacagaagcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttggcacttacagaagatggactcttgcccccaaaccttaatgacaaacagaagcatt 380

                                                                       
Query: 181 gaattctatagttattttgctaattaaaacaaatattgggattatgtgacagatttaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattctatagttattttgctaattaaaacaaatattgggattatgtgacagatttaatg 440

                                                                       
Query: 241 tagagtgtgatttaaaatgggtagcaggggatccccagggactctggattaagctgcaga 300
           ||||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tagagtgtgagggaaaatgggtagcgggggatccccagggactctggattaagctgcaga 500

                                                                    
Query: 301 tggatagagagaggtttttggctccttggtaggagaataagggagggaagctagcca 357
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 501 tggatagagagaggtttttggctccttggtaagagaataagggagggaagctggcca 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no417_e11.g1 MSMg01no417_e11.g1 CHROMAT_FILE:
MSMg01no417_e11.g1 PHD_FILE: MSMg01no417_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:07 2005
         (499 letters)



>mm_chr2_142517486_142518384
          Length = 899

 Score =  911 bits (471), Expect = 0.0
 Identities = 492/499 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagtggcagtttctatctgccaaggttataaccagcacaggcatttctcagcctacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 catagtggcagtttctatctgccaaggttataaccagcacaggcatttctcagcctacac 640

                                                                       
Query: 61  ataggctcacagcctacacataagtacaaacatgatcgtccatgtgacatagaagggaga 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 639 ataggctcacagcctacacataagtacaaacatgatcgtacatgtgacatagaagggaga 580

                                                                       
Query: 121 aagggaagcaaagcaggacccttaaggctaaatatggcatactgttaatcagtaaacctg 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 579 aagggaagcaaagcaggacccttagggctaaatatggcatactgttaatcagtaaacctg 520

                                                                       
Query: 181 ttcttatagacagactaactaaattcttttttctcctcgttttcatctttagctgtattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 519 ttcttatagacagactaactaaattcttttttctcctcgttttcatctttagctgtataa 460

                                                                       
Query: 241 tatgtcagggaagatctatatttaaagtaatttgggcatggactctcagtgaattgatgt 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 catgtcagggaagatctatatttaaagtaatttgggcatggactctcagtgaattgatgt 400

                                                                       
Query: 301 gattagcagagctcatattgaaaaacatctctaagcatttccatgttggtttttgacatt 360
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 399 gattagcagagctcatattgaaaaatatctctaagtatttccatgttggtttttgacatt 340

                                                                       
Query: 361 atgacagctaattagaaatgccatgtggcaaacagtggttcttgttttgggtgaccaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atgacagctaattagaaatgccatgtggcaaacagtggttcttgttttgggtgaccaccc 280

                                                                       
Query: 421 actagggaaaaatcatgatgctgtaaaaaggctttggtaacttcagacactgccagacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 actagggaaaaatcatgatgctgtaaaaaggctttggtaacttcagacactgccagacat 220

                              
Query: 481 tgactctgtcagctagatt 499
           |||||||||||||||||||
Sbjct: 219 tgactctgtcagctagatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)