BAC Information

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BAC

Clone NameMSMg01-417F23
Chromosome2 (Build37)
Map Location 144,885,609 - 144,886,072
singlet/doubletsinglet
Overlap genenone
Upstream gene4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417F23.T7 (MSMg01no417_f23.b1)MSMg01-417F23.TJ (MSMg01no417_f23.g1)
ACCAG512969AG512970
length774791
length of high quality
(start - end)
599 (42 - 640)464 (74 - 537)
definitionCHROMAT_FILE: MSMg01no417_f23.b1 PHD_FILE: MSMg01no417_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:14 2005CHROMAT_FILE: MSMg01no417_f23.g1 PHD_FILE: MSMg01no417_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGGCAATATTCCGGTCCTTAGGAAGAGACTCTAGCAGAAATATTTAAAG
GGAATACCAAACAGGTGAAATTAATTCTAATATTTATTTATTTAGTCTGG
CATATTCCACATACTGTCCTCTCAATGTGTAGTTATCATTAAAGCCATTT
TTCAACTTGACATAGGTATGATTTACTATATAAATTATGAACTTATAAAA
TTCACCCATGAGAATGTCACTCATGTGAAAGCAGTTAAACCTTTTCTTTT
TTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTA
TACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACT
CCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTGC
AAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTCTTG
ATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAA
TGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTT
CTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTG
AGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAATCTCACAAGAGACA
GCTACATTCTGGGCCTTTCAATAAAATCTTGCTAGCGTATGCAACGGTGC
CAGCGTTTGGATGCCGATTATGGN
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCTGGATCCTGGGGCCTTCTCCAAG
GAAGCTGTGTCTTGGCTTCAAAGACTAGGGCAACCTGGCTTAGGGTACGA
GGATATAAGGGCCATCTGGGCATAGACTCTAGGAAAATACCATAGCAGCC
TACGTTCTGAACTGGTTGCCTGAACCTGGTGAATTTGAGGGATATGCATT
TCATTACTGGACACACGAGCACCTTCAAACAGTGTATGTGATCTGGGGCT
GACAGAGCAGGGCTGTAATTCTAGTTACTTGGGAATCTGAGGTAAAAAAA
TAAATAAATAAAAGTTCAATGCTTTTCTGAATTATAGAGTGAGTTTAAGG
CCAGCCAAGGAATATTTAATGAACCCCCACCTCGAATAAAAAAAATGAAA
AATGTGAGTTGATGGTATAATTTAGTGGGGAAATACTTGCTTAATCCATG
TGACGTCCTGGGTCCAATCCATAAAACCACAAAAGTGTGTGTGTGTGTTT
TCTAAAGGGCTAACGAAGCCAAAGACCCCAGGAAAAAACCTAGAGTCAGA
CCAGACAAGGGCTGCTTTAATTCTGTAGCATCACCAAGACCCCAAAGGGG
GTTCCCGGGGTTTCATAAACAGGACCCAGGGTTGCGCTCCTTATAAAAGG
GGGGCCCTTTTTTCGTCAAAAATGGACGCCTTACTTTGCATCCTCTTGGA
ACCCGCCTTTGTATGGGGGAATATAAAATTTTTAAAGGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_f23.g1 MSMg01no417_f23.g1 CHROMAT_FILE:
MSMg01no417_f23.g1 PHD_FILE: MSMg01no417_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:14 2005
         (464 letters)



>mm_chr2_144885409_144886272
          Length = 864

 Score =  890 bits (460), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctggatcctggggccttctccaaggaagctgtgtcttggcttcaaagactagggcaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 attctggatcctggggccttctccaaggaagctgggtcttggcttcaaagactagggcaa 260

                                                                       
Query: 61  cctggcttagggtacgaggatataagggccatctgggcatagactctaggaaaataccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctggcttagggtacgaggatataagggccatctgggcatagactctaggaaaataccat 320

                                                                       
Query: 121 agcagcctacgttctgaactggttgcctgaacctggtgaatttgagggatatgcatttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagcctacgttctgaactggttgcctgaacctggtgaatttgagggatatgcatttca 380

                                                                       
Query: 181 ttactggacacacgagcaccttcaaacagtgtatgtgatctggggctgacagagcagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactggacacacgagcaccttcaaacagtgtatgtgatctggggctgacagagcagggc 440

                                                                       
Query: 241 tgtaattctagttacttgggaatctgaggtaaaaaaataaataaataaaagttcaatgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaattctagttacttgggaatctgaggtaaaaaaataaataaataaaagttcaatgct 500

                                                                       
Query: 301 tttctgaattatagagtgagtttaaggccagccaaggaatatttaatgaacccccacctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctgaattatagagtgagtttaaggccagccaaggaatatttaatgaacccccacctc 560

                                                                       
Query: 361 gaataaaaaaaatgaaaaatgtgagttgatggtataatttagtggggaaatacttgctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaataaaaaaaatgaaaaatgtgagttgatggtataatttagtggggaaatacttgctta 620

                                                       
Query: 421 atccatgtgacgtcctgggtccaatccataaaaccacaaaagtg 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atccatgtgacgtcctgggtccaatccataaaaccacaaaagtg 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)