Query= MSMg01no417_j24.b1 MSMg01no417_j24.b1 CHROMAT_FILE:
MSMg01no417_j24.b1 PHD_FILE: MSMg01no417_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:33 2005
(486 letters)
>mm_chr2_4382713_4383599
Length = 887
Score = 872 bits (451), Expect = 0.0
Identities = 478/487 (98%), Gaps = 1/487 (0%)
Strand = Plus / Plus
Query: 1 agccctctgacgccag-aaaaaaaagggggcggatatgccatcatttctaccgctcttgg 59
||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 agccctccgaggccagaaaaaaaaaggaggcggatatgccatcatttctaccgctcttgg 260
Query: 60 aagtgaccttttcttctgcctcactgccatggtcactcctaaagagtaggaatcacccat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgaccttttcttctgcctcactgccatggtcactcctaaagagtaggaatcacccat 320
Query: 120 ccactaggtcttgggaccctcagcatgtagagtgggtgggcacattagcaggcaaagctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactaggtcttgggaccctcagcatgtagagtgggtgggcacattagcaggcaaagctg 380
Query: 180 gacacagtgcctgcagcggtgtcatgaggggaggcaagtggcccatcagctcaggggaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacacagtgcctgcagcggtgtcatgaggggaggcaagtggcccatcagctcaggggaca 440
Query: 240 acatgcaccttgcagtaacgagacaagattgttcctggcaatcttggaatatacctataa 299
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 acatgcaccttgcagtaaggagacaagattgctcctggcaatcttggaatatacctataa 500
Query: 300 tgctggcatttctggggagagccagagtctcctttcgaggggggggggttcttagtctta 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctagcatttctggggagagccagagtctcctttcgaggggggggggttcttagtctta 560
Query: 360 ttaataaaagattttattaatctcttaataaaactttaagggaagttcagggatgatttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaataaaagattttattaatctcttaataaaactttaagggaagttcagggatgatttc 620
Query: 420 attgaaatttgagagaaaaacaataggtcaggtttgctgaaaaatctcaggagctgtcag 479
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 621 attgaaatttgagagaaaaacaacaggtcaggtttgctgaaaaatctcaggagctgccag 680
Query: 480 gaatata 486
|||||||
Sbjct: 681 gaatata 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space: 417452
Effective search space used: 417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_j24.g1 MSMg01no417_j24.g1 CHROMAT_FILE:
MSMg01no417_j24.g1 PHD_FILE: MSMg01no417_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:33 2005
(531 letters)
>mm_chr2_4506505_4507438
Length = 934
Score = 969 bits (501), Expect = 0.0
Identities = 525/535 (98%), Gaps = 5/535 (0%)
Strand = Plus / Minus
Query: 1 ataccatgtggaaatggtatagcttcatgaaggacggtcaggggagtggactctcctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ataccatgtggaaatggtatagcttcatgaaggacggtcaggggagtggactctcctgaa 675
Query: 61 caagaacactgtcatttctgattgtcttaagacatgtcacaccagccaatttttatatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 caagaacactgtcatttctgattgtcttaagacatgtcacaccagccaatttttatatgc 615
Query: 121 tttacaaaagggagggggagaataaagtttaagttaatattaataatttcaatcatgact 180
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 614 tttac-aaagggagggggagaataaagtttaagttaatattagtaatttcaatcatgact 556
Query: 181 taaattttctcttgtctactgaaagatgctggtttttgcttattgcatatataatatctg 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 555 taaattttctcttgtctactgaaatatgctggtttttgcttattgcatatataatatctg 496
Query: 241 ttctttgcaaaatatatgaaaatatagacaggtataataataattacatatcacaggtaa 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttctttgaaaaatatatgaaaatatagacaggtataataataattacatatcacaggtaa 436
Query: 301 tataatagtacacatgaacacacataccaactagaattttgttctattttatctgagtgc 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tataataatacacatgaacacacataccaactagaattttgttctattttatctgagtgc 376
Query: 361 tatatgctgagaaaacgtttctcctaatggaaagaatacaatatagagtgatgca----t 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 375 tatatgctgagaaaacgtttctcctaatggaaagaatacaatatagagtgatgcatagtt 316
Query: 417 agttttcaagagacgtaaatgtactttccttgctttcctggctagcacgtctgcatgatt 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 315 agttttcaagagacgtaaatgtacattccttgctttcctggctagcacgtctgcatgatt 256
Query: 477 caaacagcaggcttctagataggaggcaactgttgaagataccaactggaggaat 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 caaacagcaggcttctagataggaggcaactgttgaagataccaactggaggaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 934
Length adjustment: 10
Effective length of query: 521
Effective length of database: 924
Effective search space: 481404
Effective search space used: 481404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
