BAC Information

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BAC

Clone NameMSMg01-417L22
Chromosome2 (Build37)
Map Location 180,000,782 - 180,188,478
singlet/doubletdoublet
Overlap geneCables2, BC066135, Gata5, EG622283
Upstream geneLOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21
Downstream geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417L22.T7 (MSMg01no417_l22.b1)MSMg01-417L22.TJ (MSMg01no417_l22.g1)
ACCAG513253AG513254
length788811
length of high quality
(start - end)		471 (45 - 515)399 (74 - 472)
definitionCHROMAT_FILE: MSMg01no417_l22.b1 PHD_FILE: MSMg01no417_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:43 2005CHROMAT_FILE: MSMg01no417_l22.g1 PHD_FILE: MSMg01no417_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,000,782 - 180,001,249)(180,188,080 - 180,188,478)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAGGGCATACAGTCTGAGGCTTCCTAAACAGACGCTGGAACATA
TATGAGCTTATATATGGAACATATATATAAGTCCACTCCTGCCTGGACTT
CAGCAATTGTGCAGGCATTTTCAAATAAAGAGCTGAGCCACTTGCCTGTG
GGATGACTGCACGAGGGACAGCCTCTCTGTCTCAGCTCTGCCAACTAATA
GTCTGCCCTGTGCAAAATGTGTGGCCCTTCTGACAAGTTCAAAGCAGCCA
AAGGGCTCTCCAGGCCACACAACTGCCAAGGCACAGACACCCGTTCTCCC
CTCTTCCCTGTAGCAGGATTCATGGGTAATCTTGCTCTTCACCAAAAACA
TTCTGAAAGTGCAGCAGATGAGGCCAAGTACTGCCACACTTGGAAAACCA
CCCACTCAGAACAGTGATGATGGAGAAGGCTTTGCAGGGGATGGTACAGA
TGTTGATGGCTGTGGAGCTACTGCTGGGGATGGTGGTGGCACTGTGATGT
GTGGCAGTTTTTGGTGGGGATGGTGTCCCCGGNCGTTTTATTTTCTTTTC
CTCCCCCGCCTATATTCTCCCTTATTCCCCCTTTTCGCCTCTCTTCTTCC
ATATTTTTACTCCCCCCCTCTCCCTCTCTTTTTAATCTACCATTTTTTTT
TTATTACACACAATTTCCCCCCCCCTTTTACTTTTTCTCCCTATTTCCCC
TCCCCTTTTTTTCCTTCCTTCCCCCCTCTTCACTTTTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATAAATGAGTCGAGATTTCCCCTCTC
TTGTCCTTGTACGGGGTCTTGAATGTGGTGTCAGATGCGTGATGAGAATG
GGAGTTTTTGCCAAGTATCTTTATAAGGACGCTGAAGGCAGTTAACATTC
ATCGCCTTCACCTCTCAGTCAGCTTCGTTGGGCCTTGACTGAAATGGTAG
CTGGCCCTCTGCTTGTGATACAGCTGGCAGCTCTGGGAGCTGTCTGCACC
TTCCTAACCTTTGACAAAAGGGACAGAGATGTGGCACGTGGGATCCAGTG
TCCATCTCCTTTCAAATGGCTGCCTCCCCCTTCATCTTGCCAGGGAGGAA
CTGGGAGGTCCGGGGTGGAGTCCCAACGAGGTCAACCCCAGGGTACCACA
GAAGCTTGGAACAAGAACTGGCTGATTATGAGCCCTGGAACATTCTGCTC
TCAATCAGCTCTATCCCAGCGGGGTTTTTTGGAGAGGATATAACCCCCAG
AAAATTATCCTAGGAACCCAGCCCCGGTGGGTACCCCTGGTTCCCAAAGC
GGCATTTTTGTGTGTTTTAAGGATTGGTCCCCCATATTCTCCCGGAGTTC
CCCCCCAAATTTTTTCCCCTTCTTTTTTCCCTCCGCCCCCCCTCCCCCCT
TTTTTCTCTCTTTTTTTTTTCCTTTCCTTTTACTTTTTTTTCCCCGTTTC
TCTTCTCCCTTTCCCTTATTTCCTCCGCCCCTTTTTTTTTTCCATCCCCT
ATTATTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_l22.b1 MSMg01no417_l22.b1 CHROMAT_FILE:
MSMg01no417_l22.b1 PHD_FILE: MSMg01no417_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:43 2005
         (471 letters)



>mm_chr2_180000579_180001449
          Length = 871

 Score =  890 bits (460), Expect = 0.0
 Identities = 466/468 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaccagggcatacagtctgaggcttcctaaacagacgctggaacatatatgagc 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ggaattcaccagggcatacagtctgaggcttcctaaacagaagctggaacatatatgagc 263

                                                                       
Query: 64  ttatatatggaacatatatataagtccactcctgcctggacttcagcaattgtgcaggca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttatatatggaacatatatataagtccactcctgcctggacttcagcaattgtgcaggca 323

                                                                       
Query: 124 ttttcaaataaagagctgagccacttgcctgtgggatgactgcacgagggacagcctctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttcaaataaagagctgagccacttgcctgtgggatgactgcacgagggacagcctctc 383

                                                                       
Query: 184 tgtctcagctctgccaactaatagtctgccctgtgcaaaatgtgtggcccttctgacaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtctcagctctgccaactaatagtctgccctgtgcaaaatgtgtggcccttctgacaag 443

                                                                       
Query: 244 ttcaaagcagccaaagggctctccaggccacacaactgccaaggcacagacacccgttct 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 ttcaaagcagccaaagggctctccaggccacacaactgccaaggcacagacaccggttct 503

                                                                       
Query: 304 cccctcttccctgtagcaggattcatgggtaatcttgctcttcaccaaaaacattctgaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccctcttccctgtagcaggattcatgggtaatcttgctcttcaccaaaaacattctgaa 563

                                                                       
Query: 364 agtgcagcagatgaggccaagtactgccacacttggaaaaccacccactcagaacagtga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtgcagcagatgaggccaagtactgccacacttggaaaaccacccactcagaacagtga 623

                                                           
Query: 424 tgatggagaaggctttgcaggggatggtacagatgttgatggctgtgg 471
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgatggagaaggctttgcaggggatggtacagatgttgatggctgtgg 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_l22.g1 MSMg01no417_l22.g1 CHROMAT_FILE:
MSMg01no417_l22.g1 PHD_FILE: MSMg01no417_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:43 2005
         (399 letters)



>mm_chr2_180187880_180188678
          Length = 799

 Score =  733 bits (379), Expect = 0.0
 Identities = 394/399 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaatgagtcgagatttcccctctcttgtccttgtacggggtcttgaatgtggtgtca 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 599 cataaatgagtcgagttttcccctctcttgtccttgtacggggtcttgaatgtggtgtcg 540

                                                                       
Query: 61  gatgcgtgatgagaatgggagtttttgccaagtatctttataaggacgctgaaggcagtt 120
           ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 539 gatgcgtgaggagaatgggagtttttgccaagtatctttataacgacgctgaaggcagtt 480

                                                                       
Query: 121 aacattcatcgccttcacctctcagtcagcttcgttgggccttgactgaaatggtagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aacattcatcgccttcacctctcagtcagcttcgttgggccttgactgaaatggtagctg 420

                                                                       
Query: 181 gccctctgcttgtgatacagctggcagctctgggagctgtctgcaccttcctaacctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gccctctgcttgtgatacagctggcagctctgggagctgtctgcaccttcctaacctttg 360

                                                                       
Query: 241 acaaaagggacagagatgtggcacgtgggatccagtgtccatctcctttcaaatggctgc 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 359 acaaaagggacagagatgtggcacgtgggattcagtgtccatctcctttcaaatggctgc 300

                                                                       
Query: 301 ctcccccttcatcttgccagggaggaactgggaggtccggggtggagtcccaacgaggtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctcccccttcatcttgccagggaggaactgggaggtccggggtggagtcccaacgaggtc 240

                                                  
Query: 361 aaccccagggtaccacagaagcttggaacaagaactggc 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aaccccagggtaccacagaagcttggaacaagaactggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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