ATGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGTTTTGTCATTAGGCTTATGTAATAGTTTATATGTTT
GACCACTCCGGTGAGTTTAGACTTTTTTAGTTCCACATTAGAGTAATTAA
TTGTTTACAACCTTTTTTTTTTTAATCTTCTGAAGGAAATACTCAAATGC
TATTTTAAATTTTGCAAAATATAAAAGTTCATGTCATGATTTCTCATAAT
CTTTCCTTGTGCTATAGTTATCTGTATCGGTGCTATTTAGAATTTGAATT
TTAAAGTGTTTTCCTTTCCAAAGTACTTTAATCCTAATGCATTTTCATGT
AAGTGGGATGTAAAAACATGTTTAACATATTGGGAAAACCCATGAAAATG
TCTCAAATAATTTGCACTTTATTAAAGATAATGCATTTTAAAATAGACAC
ATTTAAAAGTATAATTTAATTTAATTATAGAATAATTTTGGGTTGTTCAG
TTTTTAGTTGACAAATAATTATGTATACCATGTTTTGATTTGTGTATACA
TTGTAGAATGATTAAATCTAGACAATTAGCATATCTTCAGCTCACTAATG
TTTTTATAGTGAGGATATTTAAAATTGGTTAGCATTTTAAATGCATATGA
AAAACAGTGTTAATGAAGGTCACTATGCAGAGCACTGAAATGTGAACTTC
CAGTATAACCAGAACTGTGAACTCTATAATCAGC

GAGGGCAGAGAGTNAGAGGAGAGGCTAGGTCATGGGAGGAGTGAGGCGTC
GGGGGTGTGTTGTGGGGTGATGTTCGATGATAXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
AGCTGAGGAATACTGAATGGCTGAGAAGCACCTAAAAAAAGTTCCACAAC
CCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTAT
ACAATGGAGTACTACGTAGCTATTAAAAACAATGAATTTATGAAATTCTT
AAACTGATGGATGGATCTGGAGGATATCATCCTAAGTGAGGTAACCAAAT
CACAAAAGAACATACATGATATGCACTCATTGATAAGTGGATATTAGCCC
AGAAGCTCAGAATACTTCTTAGAAGGGGGAACAAAATACCCAGGGAAGGA
GTTACAGAGACAAAGTTCAGAGCAGAGACTGAAGGATAGACCATTCAGAG
AGTGCCCCACTTGGGGATCCACCCCATAAACAACAACTAAGAAGCAGGCC
AACAAGAGCCTGCTGACAGGATCCTGATAAAGCTGTCTTCTGAGAGGCTC
TGCCAGTATCTGGCAAATACAGAAGTGGATGCTCACAGTCATTCATTGGA
CGGAGCACTATGTCCCCAATGAAGGAGCTAGAGAAAGTACCCCAGGGAGC
TGAAACGACGCCTGATTCCCCCCATAGGAGGGAACATCTTATATGAGACT
AAACCCGGTACACCCTAAGAACCTCCCTTTGGGACCTTAAATTCTTCGAA
ATCCTATAAATTTCTCCGGCGTTTGCAATTTTG

Query= MSMg01no418_a02.b1 MSMg01no418_a02.b1 CHROMAT_FILE:
MSMg01no418_a02.b1 PHD_FILE: MSMg01no418_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:04 2005
         (620 letters)



>mm_chr2_48920941_48921956
          Length = 1016

 Score = 1145 bits (592), Expect = 0.0
 Identities = 609/616 (98%), Gaps = 4/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgttttgtcattaggcttatgtaatagtttatatgtttgaccactccggtgag 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgttcagtcattaggcttatgtaatagtttatatgtttgaccactccggtgag 264

                                                                       
Query: 65  tttagacttttttagttccacattagagtaattaattgtttacaacctttttttttttaa 124
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||
Sbjct: 265 tttagacttttttagttccacattagagtaattaattgtttac---ctttttttttt-aa 320

                                                                       
Query: 125 tcttctgaaggaaatactcaaatgctattttaaattttgcaaaatataaaagttcatgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttctgaaggaaatactcaaatgctattttaaattttgcaaaatataaaagttcatgtc 380

                                                                       
Query: 185 atgatttctcataatctttccttgtgctatagttatctgtatcggtgctatttagaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgatttctcataatctttccttgtgctatagttatctgtatcggtgctatttagaattt 440

                                                                       
Query: 245 gaattttaaagtgttttcctttccaaagtactttaatcctaatgcattttcatgtaagtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattttaaagtgttttcctttccaaagtactttaatcctaatgcattttcatgtaagtg 500

                                                                       
Query: 305 ggatgtaaaaacatgtttaacatattgggaaaacccatgaaaatgtctcaaataatttgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatgtaaaaacatgtttaacatattgggaaaacccatgaaaatgtctcaaataatttgc 560

                                                                       
Query: 365 actttattaaagataatgcattttaaaatagacacatttaaaagtataatttaatttaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actttattaaagataatgcattttaaaatagacacatttaaaagtataatttaatttaat 620

                                                                       
Query: 425 tatagaataattttgggttgttcagtttttagttgacaaataattatgtataccatgttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatagaataattttgggttgttcagtttttagttgacaaataattatgtataccatgttt 680

                                                                       
Query: 485 tgatttgtgtatacattgtagaatgattaaatctagacaattagcatatcttcagctcac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgatttgtgtatacattgtagaatgattaaatctagacaattagcatatcttcagctcac 740

                                                                       
Query: 545 taatgtttttatagtgaggatatttaaaattggttagcattttaaatgcatatgaaaaac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taatgtttttatagtgaggatatttaaaattggttagcattttaaatgcatatgaaaaac 800

                           
Query: 605 agtgttaatgaaggtc 620
           ||||||||||| ||||
Sbjct: 801 agtgttaatgacggtc 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1016
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1006
Effective search space:   613660
Effective search space used:   613660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)