BAC Information

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BAC

Clone NameMSMg01-418A07
Chromosome2 (Build37)
Map Location 106,273,705 - 106,423,202
singlet/doubletdoublet
Overlap gene9330126M15
Upstream genePax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
Downstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418A07.T7 (MSMg01no418_a07.b1)MSMg01-418A07.TJ (MSMg01no418_a07.g1)
ACCAG513459AG513460
length739804
length of high quality
(start - end)		613 (49 - 661)553 (137 - 689)
definitionCHROMAT_FILE: MSMg01no418_a07.b1 PHD_FILE: MSMg01no418_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:06 2005CHROMAT_FILE: MSMg01no418_a07.g1 PHD_FILE: MSMg01no418_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,273,705 - 106,274,297)(106,422,763 - 106,423,202)
sequence
ATGGTCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGCCTCTCCACTTCCTGGAGACCTTGAGTAATGTACTTGAC
AGTTTTTGAAGCTGTATTTTAAGAAATGTAAAAGTAGCATCTACCTAGCA
GGATTCTTAGGAGGGTTAGATGAGATCACGTGCTTACGTTCTCAGCATCC
TGGCTGATCCAGGCGAGAGAGATCAATCGACACTCAGCATTACCGTTATC
TTTGGTTCTATCTGAGTGTCGTTTCTCAGACATTCTTTTAGTCATTGATA
AAATGAGTACCCTGCGAGTTCCCTATATATTTGGGGAACGTTTTGGTAGA
GCTTTTGTGTATTTGGGGATGATATCTCTGAACTTCTGTAGTTGAGGAGG
AGGAGGAATGAAACATGCACACTTGCCTCACTTTATGAAGAGGTAGAAAG
CCATGAGAATCACAAAGAGCAGACACACGGCACTGGAGCTGAGAACAGAG
AACCACTGCCGCTTCAGAACAGCCATTCAGAAATGGGCAAGCGAGCCGGA
TGGGCAAGCGAGCCGGATGGGCAAGTGAGCAAGCCAGCAACCTCTGCTCT
TCTGCTTCACGAAATCAAGACCTTGACAGAGACAGAATTGAAATGGTTAA
GTATTTTCAGGTCATATCTGAGGAGTAACTATATCTGACCCTCAACAGAC
CTTACACCGAATAATGAAATATCCTAAGTAACAGTTTAN

GGAGGGAGTGGTGTGGNTGGAGGGAGGGGGNAGGTGGAGGNNNNNGGCGG
TCGGATGGCGCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAAAGCTTCTG
GTCTTCTGCGTGTGTTAGAATCCAGGAGTAGGTTCTAGCACTTGTGAAGA
AACGCCTGAGCAGCAGGGTAGATGAACTTGCTGGTGAGAATGAGCGAAAG
CAGGCCAACGGCAAGAGTTTCCTTCTTGCTTGTCCTTTGCTGTGGGCTGC
TGTGGGCTGCTACCAGAAGGCGTGGCCCAGATTTAGGCTTCATCTTCTCA
CCTCAAATGATCCAATCAAGAAAATACCACAAAGGTCTACCCTGAGGCTT
GAGTTGATTGCAAATATGGTCAAGTCAATAACCAAGATTAGCCATCGCAA
TAGATTATGACATTTTTAAAAAGATTTGATAGAAATAAATTAGTGTCCTC
TCACTATTTTGATAGGAAATGTGAGTCACAGTGCTTACAGTATTTATTTG
TAAATAACTATCATCAATATTTATTTATTATTTCTGTTTCCTTGTTAAAA
CTGCTTCAGGGAATTCAGAAGCTTTTTACCACATGTCATTTCACTTTTCT
TAAAGTTAGATGTCAAACATCTGTAACACTAAATTTAAAGAAGACATATC
CAGATGCTGATCATAAATGGATGCTATTAATCTGGGTAATTAACTGTTAC
ACCATTGTATCTTCCGAGTTAAATACAGCCAAATTATTTCTCAAACCCCT
TGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_a07.b1 MSMg01no418_a07.b1 CHROMAT_FILE:
MSMg01no418_a07.b1 PHD_FILE: MSMg01no418_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:06 2005
         (613 letters)



>mm_chr2_106273502_106274514
          Length = 1013

 Score = 1044 bits (540), Expect = 0.0
 Identities = 585/610 (95%), Gaps = 17/610 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagcctctccacttcctggagaccttgagtaatgtacttgacagtttttgaag 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagcctcaccacttcctggagaccttgagtaatgtacttgacagtttttgaag 263

                                                                       
Query: 64  ctgtattttaagaaatgtaaaagtagcatctacctagcaggattcttaggagggttagat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgtattttaagaaatgtaaaagtagcatctacctagcaggattcttaggagggttagat 323

                                                                       
Query: 124 gagatcacgtgcttacgttctcagcatcctggctgatccaggcgagagagatcaatcgac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagatcacgtgcttacgttctcagcatcctggctgatccaggcgagagagatcaatcgac 383

                                                                       
Query: 184 actcagcattaccgttatctttggttctatctgagtgtcgtttctcagacattcttttag 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actcagcattaccattatctttggttctatctgagtgtcgtttctcagacattcttttag 443

                                                                       
Query: 244 tcattgataaaatgagtaccctgcgagttccctatatatttggggaacgttttggtagag 303
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 444 tcattgataaaatgagtaccctgtgagttccccatatatttggggaacgttttggtagag 503

                                                                       
Query: 304 cttttgtgtatttggggatgatatctctgaacttctgtagttgaggaggaggaggaatga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttttgtgtatttggggatgatatctctgaacttctgtagttgaggaggaggaggaatga 563

                                                                       
Query: 364 aacatgcacacttgcctcactttatgaagaggtagaaagccatgagaatcacaaagagca 423
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacatgcacactcgcctcactttatgaagaggtagaaagccatgagaatcacaaagagca 623

                                                                       
Query: 424 gacacacggcactggagctgagaacagagaaccactgccgcttcagaacagccattcaga 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 624 gacacacggcactggagctgagaacagagaaccactgccacttcagaacagtcattcaga 683

                                                                       
Query: 484 aatgggcaagcgagccggatgggcaagcgagccggatgggcaagtgagcaagccagcaac 543
           ||||||||||||||||||||||||||||             |||    ||||||||||||
Sbjct: 684 aatgggcaagcgagccggatgggcaagc-------------aag----caagccagcaac 726

                                                                       
Query: 544 ctctgctcttctgcttcacgaaatcaagaccttgacagagacagaattgaaatggttaag 603
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ctctgctcttctgcttcatgaaatcaagaccttgacagagacagaattgaaatggttaag 786

                     
Query: 604 tattttcagg 613
           ||||||||||
Sbjct: 787 tattttcagg 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no418_a07.g1 MSMg01no418_a07.g1 CHROMAT_FILE:
MSMg01no418_a07.g1 PHD_FILE: MSMg01no418_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:06 2005
         (553 letters)



>mm_chr2_106422250_106423202
          Length = 953

 Score =  828 bits (428), Expect = 0.0
 Identities = 437/440 (99%)
 Strand = Plus / Minus

                                                                       
Query: 110 gaaagcaggccaacggcaagagtttccttcttgcttgtcctttgctgtgggctgctgtgg 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 gaaagcaggccaacggcaagagtttccttcttgcttgtcctttgctgtgggctgctgtgg 894

                                                                       
Query: 170 gctgctaccagaaggcgtggcccagatttaggcttcatcttctcacctcaaatgatccaa 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 gctgctaccagaaggcgtggcccagatttaggcttcatcttctcacctcaaatgatccaa 834

                                                                       
Query: 230 tcaagaaaataccacaaaggtctaccctgaggcttgagttgattgcaaatatggtcaagt 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tcaagaaaataccacaaaggtctaccctgaggcttgagttgattgcaaatatggtcaagt 774

                                                                       
Query: 290 caataaccaagattagccatcgcaatagattatgacatttttaaaaagatttgatagaaa 349
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 773 caataaccaagattagccatcgcaatagattatgacattttaaaaaagatttgatagaaa 714

                                                                       
Query: 350 taaattagtgtcctctcactattttgataggaaatgtgagtcacagtgcttacagtattt 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 taaattagtgtcctctcactattttgataggaaatgtgagtcacagtgcttacagtattt 654

                                                                       
Query: 410 atttgtaaataactatcatcaatatttatttattatttctgtttccttgttaaaactgct 469
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 653 atttgtaaataactatcatgaatatttatttattatttctgtttccttgttaaaactgcc 594

                                                                       
Query: 470 tcagggaattcagaagctttttaccacatgtcatttcacttttcttaaagttagatgtca 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tcagggaattcagaagctttttaccacatgtcatttcacttttcttaaagttagatgtca 534

                               
Query: 530 aacatctgtaacactaaatt 549
           ||||||||||||||||||||
Sbjct: 533 aacatctgtaacactaaatt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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