BAC Information

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BAC

Clone NameMSMg01-418C12
Chromosome2 (Build37)
Map Location 54,329,661 - 54,329,867
singlet/doubletsinglet
Overlap geneGalnt13
Upstream geneLOC666872, LOC666876, LOC207933, Rprm, LOC666913, LOC626563, LOC100041792, LOC100042878
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418C12.T7 (MSMg01no418_c12.b1)MSMg01-418C12.TJ (MSMg01no418_c12.g1)
ACCAG513562AG513563
length767753
length of high quality
(start - end)
207 (74 - 280)401 (73 - 473)
definitionCHROMAT_FILE: MSMg01no418_c12.b1 PHD_FILE: MSMg01no418_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:17 2005CHROMAT_FILE: MSMg01no418_c12.g1 PHD_FILE: MSMg01no418_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTCTTATCCCCGCGATTTTCATATTTAGACAAAAGTGCATTTA
AAAATTTTGTGTGATTTGAATAATTACCTTAAACATCTACCTAAAATTTC
TTAGAAGTGTACTATAGTTTTGAGTTGGCTTGACGTGATTTTATTAATAT
TTTGTATAAAAATTGTACTCAAAAGTTATTCTGGAGTTTGAGTGTTGTGT
TCTTATATTTTATAAGTATCTTTGACAGTTATTTAAAATGTTCACATATA
CATGGAAATATTTCTGTTCATTATTCTTTCTACTTGATAGCTATATAACA
TGTCTTTTGCAAAAGTATTATTTCATAGAATGAAATTATGTATTGCCTGC
TTATAGACCTTCATCATTTCTTTGGTGATATTGCCAAATTCCTTATATTT
TGCATTTCTATTCCTTCACAGACATATTTTTTACGATTCTTTTGAAGACG
TATATTTTCAAATCATTTTGAAACATTCACACATCATATACAGCAAGTGA
TCTGTAAACCTGTTCCTCAGTCACTTACACTCACTTGAAATTTTTGCCCA
TCCTTCCTAATATACCTTTTTTTTTTCTGCCCTTCCCTTGTATTCTCTGT
ACTACACTACATATTGGTGCCTTCTCCCTAGGCCAACGGTAGTACTTTCT
GCAATCTTGATTTACCCCCCCCCTTGTTCCCAAGTCCCCTCCTACACCAC
CTCGATCCCATTCATTT
CGATGATGNTGGTAGGCTGGCGGCCGCCTGGGTCAAGACTGGAGGTGACC
TATAGAAGGTTTCCAAGAATTCCTGATCTTTCCATGACCTTTATCATGAA
GGGGTGTTGTCTTTTATCAAATGCTTTCTCAACATCTAAAGAGATGATCA
TGTGATTATTGTCTTTGAGTTTGTTTATGTATCAGATTACTTTGATGAAC
TTCCAGGATCCCTGCATCCCTGGGATGAATCCTACTTGGTCATGATGGAT
GATCATTTGATGTTCATGGATCCAGTTTGAGAGGATTTTATTGAGTTTTT
TTTGCATTGATATTTATTTTTTAATTGGCCTGAAGTTCTCTTTCTTTGTT
GGATCTTTGTGTGGTTTACCTATCACAGTAATTGTGTCTTCATAGAAAGA
ATTGGGTAGAGTAACTTCTGTTTGTATTTTGTACAATTGTTTGAGGAGAG
TTGGAATTATGTCTTCTTCGAGGTCTGGTAGACCTCTGCACTAAACCCAT
CTGGCCCTGGGCTTTTTGTTTGTTTGTCTGTTTTTGTATCTGTCTTTGCT
ATTGTCTGGCATACTTCTATAGAGTGCTTCTATTTCTTTAGGGATATACA
CTTTGTTACATTCTTTTCTGTTGTTCCCTCAATTACTTTTTTATCACGAT
TTTCCTATATTTTCTCTACTCCCTTTCATCCCTGATTTTCTAACTGTAAA
ATTACAATCTCCTATCCTCCTTAAAACACATATTTTATACACATGATTTC
CAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_c12.b1 MSMg01no418_c12.b1 CHROMAT_FILE:
MSMg01no418_c12.b1 PHD_FILE: MSMg01no418_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:17 2005
         (207 letters)



>mm_chr2_54329461_54330067
          Length = 607

 Score =  364 bits (188), Expect = e-105
 Identities = 203/208 (97%), Gaps = 2/208 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcatatttagacaaaagtgcatttaaaaattttgtgtgatttgaataattaccttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcatatttagacaaaagtgcatttaaaaattttgtgtgatttgaataattaccttaaa 260

                                                                       
Query: 61  catctacctaaaatttcttagaagtgtactatagttttgagttggctt-gacgtgatttt 119
           |||||||||||| ||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct: 261 catctacctaaattttcttagaagtgtactatagttttgagttg-ctttgatgtgatttt 319

                                                                       
Query: 120 attaatattttgtataaaaattgtactcaaaagttattctggagtttgagtgttgtgttc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 320 attaatattttgtataaaaattgtactcaaaagttattctggagtttgagtgctgtgttc 379

                                       
Query: 180 ttatattttataagtatctttgacagtt 207
           ||||||||||||||||||||||||||||
Sbjct: 380 ttatattttataagtatctttgacagtt 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)