BAC Information

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BAC

Clone NameMSMg01-418E02
Chromosome2 (Build37)
Map Location 116,932,396 - 116,932,678
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433464, Tmco5, LOC100043557, LOC241621
Downstream geneSpred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418E02.T7 (MSMg01no418_e02.b1)MSMg01-418E02.TJ (MSMg01no418_e02.g1)
ACCAG513636AG513637
length762764
length of high quality
(start - end)
404 (50 - 453)283 (56 - 338)
definitionCHROMAT_FILE: MSMg01no418_e02.b1 PHD_FILE: MSMg01no418_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:24 2005CHROMAT_FILE: MSMg01no418_e02.g1 PHD_FILE: MSMg01no418_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACTTGACGAATACCGAATGGCTGAGAAGCACCTGAAAAA
ATGTTCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATAGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGTCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAACTGCACATAGTACTACCGGAGGATCCTGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACCGGTAAGAAGAGCACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCGA
GATGCCCCTCAACAGAGGAATGGATACAGAACATGTGGTACATTTACACA
ATGGAGCACTACTCAGCTATTATAAAGAATGAATTTATGAAATTCCTAGG
CAAATAGATGGACCTGGAGGGTATCATCCTGAGTGAGGTAACCCAATCAC
AAAGCAACTCACCTAATATGTATTCATTGAGAAGCGGATATTATTCCCCA
TACTTACGATCCTCTAAGACCTAACACCCTCCCTTGCTTAATCGCATCGA
AACTCCCGAAAAAATGACCCACCTCCGTGTGGTACCCCTTCGCCCCCCTT
TCCAACACTTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATATGTTCTCAATTGCCAACAGTAGTCCCTTGTAGACATGTAGAC
TTGGTGCCCTCTGACTGCAGAAATTTATGACAGAGTTCCTAGTGCTTATA
AAGAACACTTGATCTAATTTAAAAAGCAATTTAGTATCATTTTCTTTGCT
CCCTGGGACTCCTGGGAGTGCTGTGTATAACTTGGTTTCTTTTTCCTGTT
TCTGTGAGAAATGACTCTGACAAAAGCAACTTAAGGGAGAAAGGGTTTCT
TTTCCCTCACAGTTTCAGGATCCAGCTTATCATGGCCAGCATGTCTTAGC
AGTCGTAGGTTGAGGCTCCTGGTTCCTTCACATCTGTACTTTGCTAGCAT
AGACATGGTGAATACTTGCGATCGGTATCATTTTCTTGCATTGCACAGTT
CATGTTCTCCAACTCTGTGTATGGTGGTCTGCCCTTACCCTTACAACTAA
TCTAAACTTGATGATACCTCACTATGTGTCCTCACGATCTCTCTCATGCG
AAATTAGTCTTTTCTTTTGTCATTTTTTACCCTCATCCTTTAGACTTTCG
ATATACTTCGTTGTAATTCCTTTACTCTCATTATGCGCTTTCTCACTATA
TACATATCCTCTTTTTATTTCTATCTTCATATTATTTCAACTGCGAATAA
CTCTCGACACTCTACTGTCCTACCCAACATCAACTACACATCTTACTCAT
TTCGTCCTTCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_e02.g1 MSMg01no418_e02.g1 CHROMAT_FILE:
MSMg01no418_e02.g1 PHD_FILE: MSMg01no418_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:24 2005
         (283 letters)



>mm_chr2_116932196_116932878
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgttctcaattgccaacagtagtcccttgtagacatgtagacttggtgccctctgac 60
           |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 atatgttctcaattaccaacagtagtcccttgtagacatggagacttggtgccctctgac 260

                                                                       
Query: 61  tgcagaaatttatgacagagttcctagtgcttataaagaacacttgatctaatttaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagaaatttatgacagagttcctagtgcttataaagaacacttgatctaatttaaaaa 320

                                                                       
Query: 121 gcaatttagtatcattttctttgctccctgggactcctgggagtgctgtgtataacttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaatttagtatcattttctttgctccctgggactcctgggagtgctgtgtataacttgg 380

                                                                       
Query: 181 tttctttttcctgtttctgtgagaaatgactctgacaaaagcaacttaagggagaaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctttttcctgtttctgtgagaaatgactctgacaaaagcaacttaagggagaaaggg 440

                                                      
Query: 241 tttcttttccctcacagtttcaggatccagcttatcatggcca 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttttccctcacagtttcaggatccagcttatcatggcca 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)