BAC Information

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BAC

Clone NameMSMg01-418F17
Chromosome2 (Build37)
Map Location 109,232,713 - 109,233,251
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
Downstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418F17.T7 (MSMg01no418_f17.b1)MSMg01-418F17.TJ (MSMg01no418_f17.g1)
ACCAG513714AG513715
length742740
length of high quality
(start - end)
539 (69 - 607)501 (74 - 574)
definitionCHROMAT_FILE: MSMg01no418_f17.b1 PHD_FILE: MSMg01no418_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:32 2005CHROMAT_FILE: MSMg01no418_f17.g1 PHD_FILE: MSMg01no418_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCATTCTCTCACATAAAAAGGCACTGTTATCCCAGATAAGGAAAG
AAATGTCACTAAATTACTGCAGATAATAGTGCGAAATCCAGAAACCTATA
TTCTAATTTTACTGCATTGTTCCCTATTTTCACACAGAAAGCTGATTTAT
CCTTTTTATTTGCAGATCGTGGTACAGATTACAAAGTGCTTTGGTGACAC
AGAGTCCGCTTACAGATCACCAATAAACCAATAAAGTGGTTAAGATAGGG
GAGGGAACCTCAGTTTTTGAGGTGAAGGCTTAGAGAGAAAAATTACTCTT
TCTAGGTCACTAAAACAAAAACTGGAGTCACCAAGATGGGAATTCCTATC
TGGAAAGCCAGTTCTCTTTCTAATCACTTCTGTCTCCCGCACTGATACTG
TATTTCCTTCCTGGCAGGGGAGAAATATTGGGCCTTTAAAACAACTTGCC
TTTGTTAAAAGGCTCCCTATGCGCTGCCCACACATCTTGCTCTTTGGTCC
TGTGTTAGGCATTAAAGTTCTGATCTGTCCAGTTAAAACAGCTACACTCT
AAGCTGTGGCTGTGAGGCACAAGCTAATATTTGTCCTATCTTGACTTGTG
TTGTTACTGAATTTTGACAACCCATAATTCATTTCTAATTTTTAAAAATC
ANGTGCCTAACTCCTCTGTAAATGTGCTGGGGCATATCACTA
AGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCCTACTGAGTGGGCTTTAAATCCC
ACTAGATTTTGGCTACCTCCAAGGTATAAGTGCCACTAATACACCCTTGG
AGATATCCTGCAATGCTGACAATTGTTGTGTTTCATGAGCTTAACAGCTG
GGGATACTGTTGCTTGCTTTTTCTCCTTTGACATCTTCAATAGCACTAAT
CAATACTAAAAGAGTCATTCTTCAGGGAGAAGCCTTCCAAGACAATACAC
CTGGATTCCTCCTAGTCCTATGTCAAATGTCCCTGGAGTCTTCAGCAATA
GGGTCTTACCTTTGACTTCTAGAAGGCACAAAAGGACAAAGGAAATAGAT
TATATTATTTGGGGATCATTTTGACTTCTTTAACAACTCAAGGGCTAATT
CCCCATTCTGGCAGTGAATTGTTTCATTTTTGGCTTTGCTTTTAAGATAG
TCTATAGCTCTTGTGTGGAGGATTATCACTCCCAGTGGTTTAAGTTAATT
CAATCTTTTCCTGTTTGTGTGNGNGTGTGTGNGTATGCGTGCGTGCATTT
ACACATCCTACCCTTCCCGCATATTATACATGCATTTCTACTCCACTAAT
ATTACTCTTTGACCCTTTTCTAAGATCCTCCCCCCTTTCCATTTAAATCT
CCCTCATGCCCCTCCTTTTTACTTTTTCCCACCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_f17.b1 MSMg01no418_f17.b1 CHROMAT_FILE:
MSMg01no418_f17.b1 PHD_FILE: MSMg01no418_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:32 2005
         (539 letters)



>mm_chr2_109232513_109233451
          Length = 939

 Score = 1027 bits (531), Expect = 0.0
 Identities = 537/539 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaaaggcactgttatcccagataaggaaagaaatgtcactaaattactgcagataata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 taaaaaggcactgttatcccagataaggaaagaaatgtcactaaattactgcagataata 680

                                                                       
Query: 61  gtgcgaaatccagaaacctatattctaattttactgcattgttccctattttcacacaga 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtgcaaaatccagaaacctatattctaattttactgcattgttccctattttcacacaga 620

                                                                       
Query: 121 aagctgatttatcctttttatttgcagatcgtggtacagattacaaagtgctttggtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aagctgatttatcctttttatttgcagatcgtggtacagattacaaagtgctttggtgac 560

                                                                       
Query: 181 acagagtccgcttacagatcaccaataaaccaataaagtggttaagataggggagggaac 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acagagtcctcttacagatcaccaataaaccaataaagtggttaagataggggagggaac 500

                                                                       
Query: 241 ctcagtttttgaggtgaaggcttagagagaaaaattactctttctaggtcactaaaacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctcagtttttgaggtgaaggcttagagagaaaaattactctttctaggtcactaaaacaa 440

                                                                       
Query: 301 aaactggagtcaccaagatgggaattcctatctggaaagccagttctctttctaatcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaactggagtcaccaagatgggaattcctatctggaaagccagttctctttctaatcact 380

                                                                       
Query: 361 tctgtctcccgcactgatactgtatttccttcctggcaggggagaaatattgggccttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctgtctcccgcactgatactgtatttccttcctggcaggggagaaatattgggccttta 320

                                                                       
Query: 421 aaacaacttgcctttgttaaaaggctccctatgcgctgcccacacatcttgctctttggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaacaacttgcctttgttaaaaggctccctatgcgctgcccacacatcttgctctttggt 260

                                                                      
Query: 481 cctgtgttaggcattaaagttctgatctgtccagttaaaacagctacactctaagctgt 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cctgtgttaggcattaaagttctgatctgtccagttaaaacagctacactctaagctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)