BAC Information

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BAC

Clone NameMSMg01-418G04
Chromosome2 (Build37)
Map Location 31,901,645 - 32,049,838
singlet/doubletdoublet
Overlap geneNup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik
Upstream geneFnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik
Downstream genePomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418G04.T7 (MSMg01no418_g04.b1)MSMg01-418G04.TJ (MSMg01no418_g04.g1)
ACCAG513735AG513736
length751835
length of high quality
(start - end)		375 (50 - 424)413 (148 - 560)
definitionCHROMAT_FILE: MSMg01no418_g04.b1 PHD_FILE: MSMg01no418_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:34 2005CHROMAT_FILE: MSMg01no418_g04.g1 PHD_FILE: MSMg01no418_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:34 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(32,049,657 - 32,049,838)(31,901,645 - 31,902,054)
sequence
AGGATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTTTGTTACGTGGTAAACGAGGGGTCGGGAACAGGAAAGA
GTGGAGAGCTTTGTAATGAATCACAGTGCCCCATCTGTCTTGGATCCAAT
AAGGCTGAGAACACCTGTCTTCCCTTTTTCTAAAGAACCAAAGCTACAGT
GGCATTGAACAGCAGGGGCAGAAGCCAGGGGCAGTCACTCAGGGAGCGCC
CTCTGCTCTGGCTGCATATAAGGGCTGCTGGCCCTCCACCCACTCACCTG
CCCACCCATCATCCGCATCAGTGTCCAGATCATCCAAGCCCTTCAGGTTT
GGCCAGAGGGAGCGGGACTCTGCTGCTGGCCACAGTGGCCCCTATCTGCT
ACCCTGAGAGAGCTCAGGCTGAGGGGCGAACAGGAGCCTACAGCTATGGA
CAGGATGTTTTGAGTACTTACAAACGCTGGGAGCATGTCATGGTACGTGG
TTGGCTGGTAACCGTGCCCCATGAACTGGGAGGTCCCTCTGCGGTCGGTT
TGATTTGGCCTGAAAGAGGGCTCCTTAGAATCGCTTGGGTATGCCGAGTA
AAGGCTCCATATGCCCCTACGGTATTCCTGTTGCCCATCTCTGCCGTTCA
ACCTTCCATACATCCCTTCCACTAGAATCCCTTATCCTTCCTCCTTTTTT
TTATTCTCCCCCTTTTCCGATTTCCCATTTCCCCCCCCTTAACCTTCTTA
C

GTAAAGGATGGAGGGAAGCTATGGAGTAGAGGAAGGAGGGAGAGGCGGAG
AGGGGNNNGGNNGGGGAACGAGGTCCCGATGCTAXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAT
TGCAAGTAGCAGCCGCTGCTCGCCTGACTGCTCTCATGCCCTACATTTGA
TCTTCTGATCACGGTGGCAGGAGCGGGTGTGAGGACGATAAAGCAGATCC
GCCACTTGAACAGGAGATTTGCTGTCAGCAGTAATGACCCTGCCTCTAAT
CTGAGCTCAGCATACCCTCACTACCCTTCTCTTCTGAACCTCAGAACTAG
AGCAAATCTTGGAGGTTTGGGGATACCTCAGGAACAGTCCCAGGAGGCTG
CCTGGTGCTGGACCTGACCCAGTTCTGTTGTCTCCGTCTTGCCTGTAATG
GCCTAGAGTCCTGATCTGGGCGCTTAGGCCATCCTCACAGCCATCTTAAC
ACCTGGTCACATTTATACTGTAGCCTTCATCCAAAATGAGAGTCAGTGCG
CTTTATACTCCTGCCACTAGTCAGGGACATTGGCGATAGGCCCCACAGCC
ACTTGCCTGTAAATAAATAATAGGGATGTGGTTGGGTGCTAATCTGGACC
ATTCTGCTTCTGGTGGGAACCACCTCCTGAGATACAGCTAGAGAATGGTG
TCTCGAATCCTCCGTATCTGATAACGTGGCCTCCCTAAAACGCCACTTTA
CCTGAATGCGAGCAATTTATAATACAACAACATCTCTACACCTCTGCCCC
CTGCCTTTTTATCATCTTACAACATATTTTCCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_g04.b1 MSMg01no418_g04.b1 CHROMAT_FILE:
MSMg01no418_g04.b1 PHD_FILE: MSMg01no418_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:34 2005
         (375 letters)



>mm_chr2_32049453_32050227
          Length = 775

 Score =  298 bits (154), Expect = 4e-85
 Identities = 175/182 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttgttacgtggtaaacgaggggtcgggaacaggaaagagtggagagctttg 64
           ||||||||||||  | |||| |||||||||||||||||| || |||||||||||||||||
Sbjct: 386 gaattcactttggaaagtggaaaacgaggggtcgggaaccgggaagagtggagagctttg 327

                                                                       
Query: 65  taatgaatcacagtgccccatctgtcttggatccaataaggctgagaacacctgtcttcc 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 326 taatgaatcacagtgccccatctgccttggatccaataaggctgagaacacctgtcttcc 267

                                                                       
Query: 125 ctttttctaaagaaccaaagctacagtggcattgaacagcaggggcagaagccaggggca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctttttctaaagaaccaaagctacagtggcattgaacagcaggggcagaagccaggggca 207

             
Query: 185 gt 186
           ||
Sbjct: 206 gt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no418_g04.g1 MSMg01no418_g04.g1 CHROMAT_FILE:
MSMg01no418_g04.g1 PHD_FILE: MSMg01no418_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:34 2005
         (413 letters)



>mm_chr2_31901445_31902257
          Length = 813

 Score =  793 bits (410), Expect = 0.0
 Identities = 410/410 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgcaagtagcagccgctgctcgcctgactgctctcatgccctacatttgatcttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattgcaagtagcagccgctgctcgcctgactgctctcatgccctacatttgatcttctg 260

                                                                       
Query: 61  atcacggtggcaggagcgggtgtgaggacgataaagcagatccgccacttgaacaggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcacggtggcaggagcgggtgtgaggacgataaagcagatccgccacttgaacaggaga 320

                                                                       
Query: 121 tttgctgtcagcagtaatgaccctgcctctaatctgagctcagcataccctcactaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgctgtcagcagtaatgaccctgcctctaatctgagctcagcataccctcactaccct 380

                                                                       
Query: 181 tctcttctgaacctcagaactagagcaaatcttggaggtttggggatacctcaggaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcttctgaacctcagaactagagcaaatcttggaggtttggggatacctcaggaacag 440

                                                                       
Query: 241 tcccaggaggctgcctggtgctggacctgacccagttctgttgtctccgtcttgcctgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccaggaggctgcctggtgctggacctgacccagttctgttgtctccgtcttgcctgta 500

                                                                       
Query: 301 atggcctagagtcctgatctgggcgcttaggccatcctcacagccatcttaacacctggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggcctagagtcctgatctgggcgcttaggccatcctcacagccatcttaacacctggt 560

                                                             
Query: 361 cacatttatactgtagccttcatccaaaatgagagtcagtgcgctttata 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacatttatactgtagccttcatccaaaatgagagtcagtgcgctttata 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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