BAC Information

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BAC

Clone NameMSMg01-418G16
Chromosome2 (Build37)
Map Location 15,358,590 - 15,358,995
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc39a12, Cacnb2, LOC100041164, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329
Downstream geneLOC227588, LOC625457, Plxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418G16.T7 (MSMg01no418_g16.b1)MSMg01-418G16.TJ (MSMg01no418_g16.g1)
ACCAG513758AG513759
length758813
length of high quality
(start - end)
554 (70 - 623)407 (125 - 531)
definitionCHROMAT_FILE: MSMg01no418_g16.b1 PHD_FILE: MSMg01no418_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:36 2005CHROMAT_FILE: MSMg01no418_g16.g1 PHD_FILE: MSMg01no418_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTGGCATACCGAATAGCTGAGTAGCACCTGAAAAAATGT
TCAACATCCTTAATAATCAGGGAAGTGCAAGTTAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAACAGGAACACTCCTCTATTTTTGGTGG
CATTGCAAGCTGGTATAACTACTCTGGAAATCAGTCTGGTGGTTTCTTAG
AAAATTGGCCATATTACTACATGATAATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATTTTCTAACCTGTAATATGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGTCAGAAGCTGGAAAGAACCCAGATG
TCCCTCAACAAAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACCCAGCAATTAAAAACAATGAGTCTATGAAATTCTTAGGCAAA
TGGATGGATCTGGAGGATATCATCCTTAGTGAGGTAACCCAATCACAAAA
GAACACACATGATATACACTCACTGATATTAGCCCAGATACTTAAAATAT
CCAAGATACAATTTGCTTAACACATGACACTCACGAAGTTGGAAGACCAC
TGTGTGGATTCTTTGTTTCCTTCTTACAAATGTGAACAAAATACCTATGT
CATTGATT
CCTCCATGCTTTTTTTCTTGCTCTCTTGNTTNNNNNGTCTCTGNCNCNCC
AATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGTGTGTTCTGAACACACCATGGG
AGAAAAAGTGCAAGGGAAAGAAAGAAATGGGAGTTTCCACCTGGCTTCCA
TAAAAGATAAATCACAGAGCTAAAGGTACAGAATGGTAGTTAGGGAAAGC
AAGAAAACAATAAGGAAAAGCAACAGCAAGGGGAAAAATATGTTTTAAAA
ATGTGATGAAGAGATAAAATAAGCAGAGATGAGGAAAGTCTGAAGCTTGT
AATCAGGGCAGGACTAGACACTTCTTATTTAGAACCATTGTTGAAATCAC
ATCTCCCAATAGCACAACTATAATTTCCAAAAATCTTAATCTACATATTT
CTCCTTTCAGAAAATCATCTGCCTTTGGCTACAGCTTTGGGAAATTGCAT
TTATGTCAGGACACTGCAATGCTGTTGCCGTTTGCTTCTTGTTGTTATTA
ATGTTGCTTATTTATATTGCCAAGGATATATTTAGTCTGTACCTGACTGC
TCTTATCTGTTACATAAAACACAGACCCTCTAGCATCTTAACGTACCTCT
ATGCGAGTGAAATTCCATAAGATGATACATTTCGATGTTTATAAAGAGAA
AGCCTAAAGGTCCCTAACTCTACAAATTTATTTTCTCTATACACAAGAGT
GTTACTATAAGTCTCCTACCCATAACATTTTTCCCCTGAAATACTATCCA
CCCTCTTAATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_g16.g1 MSMg01no418_g16.g1 CHROMAT_FILE:
MSMg01no418_g16.g1 PHD_FILE: MSMg01no418_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:36 2005
         (407 letters)



>mm_chr2_15358390_15359195
          Length = 806

 Score =  704 bits (364), Expect = 0.0
 Identities = 397/408 (97%), Gaps = 3/408 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtgtgttctgaacacaccatgggagaaaaagtgcaagggaaagaaagaaatgggagt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 606 catgtgtgttctgaacacaccat-ggagaaaaagtgcaagggaaagaaagaaatgggagt 548

                                                                       
Query: 61  ttccacctggcttccataaaagataaatcacagagctaaaggtacagaatggt-agttag 119
           |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 547 ttccacctggcttccagaaaagataaatcacagagctaaaggtacagaatggtga-ttag 489

                                                                       
Query: 120 ggaaagcaagaaaacaataaggaaaagcaacagcaaggggaaaaatatgttttaaaaatg 179
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 488 ggaaagcaagaaaacaagaaggaaaagcaacagcaagaggaaaaatatgttttaaaaatg 429

                                                                       
Query: 180 tgatgaagagataaaataagcagagatgaggaaagtctgaagcttgtaatcagggcagga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgatgaagagataaaataagcagagatgaggaaagtctgaagcttgtaatcagggcagga 369

                                                                       
Query: 240 ctagacacttcttatttagaaccattgttgaaatcacatctcccaatagcacaactataa 299
           |||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 368 ctagacacttcagatttagaaccattgttgaaatcacacctcccaatagcacaactataa 309

                                                                       
Query: 300 tttccaaaaatcttaatctacatatttctcctttcagaaaatcatctgcctttggctaca 359
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 308 tttccaaaaatcttaatctacatatttctcctttcagaaaagcacctgcctttggctaca 249

                                                           
Query: 360 gctttgggaaattgcatttatgtcaggacactgcaatgctgttgccgt 407
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gctttgggaaattgcatttatgtcaggacactgcaatgctgttgccgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 806
Length adjustment: 9
Effective length of query: 398
Effective length of database: 797
Effective search space:   317206
Effective search space used:   317206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)