BAC Information

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BAC

Clone NameMSMg01-419E14
Chromosome2 (Build37)
Map Location 102,799,055 - 102,799,543
singlet/doubletsinglet
Overlap genenone
Upstream geneLdlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44
Downstream genePdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419E14.T7 (MSMg01no419_e14.b1)MSMg01-419E14.TJ (MSMg01no419_e14.g1)
ACCAG514424AG514425
length753762
length of high quality
(start - end)		157 (326 - 482)491 (65 - 555)
definitionCHROMAT_FILE: MSMg01no419_e14.b1 PHD_FILE: MSMg01no419_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:45 2005CHROMAT_FILE: MSMg01no419_e14.g1 PHD_FILE: MSMg01no419_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTCCATAATTGTGGGCGCGTAAAGAGACCCATTTCTCACAGAGACG
CGGGAANCCTTTTCTCACCACACAAAAAATCTCCCAGAAAACACTTATAG
CGCATATAATGGGGATATACCCTCTTTATAGAATCTCAGACCGGGGAAGA
GAACCAGGGGGGAACTCCACATTAATAATTCCAGCAGAAGGAAGGTGGAG
GCAGGAAAACTGTGAGTTTGAGGCTGGCCTGGGCTAGTACATCCAAGACC
AGCATAGACTACAGAGTAAGATGGTATTTAAAATAATTAAATAGAAAACA
AACAAAAGCAAAAATAAAGTATTAAGTAGAGCTCTATGTGAAGGATATGG
TATGGTTCTGAATATGGAGGCCAGGTGATATTTAATGACATGATTGATAT
TCCCATACAGAATGAGAAAGGTATCAGGTACATATGTGGAAGCAAAGTAC
AAAAAGGAGGGAAGAAAAAAATATAAGTGCCTTGAAAATGCAAAGGCTCA
AGGTTTCCAGCAATTGGAGTAGAGTATGTGAGAAGGCTCACCCAATGAGC
AATGATTCTCACCCTGTAAGCCATGATTTCTTGTTGTGGGGAAGGGGGGG
CCANTGAAACACCCCTCCCCAGGGGCCGTTTACCCCCCCTTCTCCTTTTT
AATTCTCACACTAGCCAAATTTTAGTTCCCACCGCTCGCCTCCACCTTTG
GTCGGAAATCCCCCTCCCCCGTGCAACCGCCTCTTATATTCCCCACCCCC
CCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCCATGCAGTCTATATGAATTAAACTGAAGTCAT
AGCATACTGTTCTTTCCATTAGCACGCCCCCTTCCACACATACATACACA
CCCAGGGCCTTCCACAGTACTCTGAGAAAGAGCCAAGCCTCACAACCTCT
GGTGACCTGCCTGGGCCCTTCCCTCTGACTTCACTTCCCACCAATGTCTT
CTTGGCTCCCCTTCCCGCCACACCTGCTTCCTGGCTGTCCTCCCAGGTAC
TGTCCTGTTCACTCATCTTTTCCTTCAAGCTTCACCTTGGGGTGGCACGT
TCCCCATTCACCATCTGTACAGGGAAAGTATTCCTGCTGGACCCTCTGCC
CACACTGCTGGTGTGAAGATTCTTTCACAGTGTCCTTGCGGTACATTGAG
ACATCCCAGCTTCTTCTCTGTGATGATCGGTTGGGTTCAGACAGAAGAAG
AAACACACATCAGGTTCAGAAAAGTAGATTTACTAGACTCACATGTTACT
TGGGGCTGTGGGAAAACACAGGGTGGTCAGAGGGCAGAGAAGTCAGGAAA
AACCCAGGGACTGCCTTTTATGGGCATTCCTATGAACAAAGGGAGGGTTG
CATGTTAAGATTCAAGATTAATAGTTTGCCTAATTCCTCAAGCTCTAAGT
AATTGGATGGTCCTCTGGTGGCCCGGGGGCTCAACCCGGGATGAAAAAAA
TAATAAGGGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_e14.g1 MSMg01no419_e14.g1 CHROMAT_FILE:
MSMg01no419_e14.g1 PHD_FILE: MSMg01no419_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:45 2005
         (491 letters)



>mm_chr2_102798853_102799743
          Length = 891

 Score =  922 bits (477), Expect = 0.0
 Identities = 487/491 (99%), Gaps = 2/491 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccatgcagtctatatgaattaaactgaagtcatagcatactgttctttccattagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tttccatgcagtctatatgaattaaactgaagtcatagcatactgttctttccattagca 262

                                                                       
Query: 61  cgcccccttccacacatacatacacacccagggccttccacagtactctgagaaagagcc 120
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cgcccccttccacacat--atacacacccagggccttccacagtactctgagaaagagcc 320

                                                                       
Query: 121 aagcctcacaacctctggtgacctgcctgggcccttccctctgacttcacttcccaccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcctcacaacctctggtgacctgcctgggcccttccctctgacttcacttcccaccaa 380

                                                                       
Query: 181 tgtcttcttggctccccttcccgccacacctgcttcctggctgtcctcccaggtactgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcttcttggctccccttcccgccacacctgcttcctggctgtcctcccaggtactgtc 440

                                                                       
Query: 241 ctgttcactcatcttttccttcaagcttcaccttggggtggcacgttccccattcaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgttcactcatcttttccttcaagcttcaccttggggtggcacgttccccattcaccat 500

                                                                       
Query: 301 ctgtacagggaaagtattcctgctggaccctctgcccacactgctggtgtgaagattctt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ctgtacagggaaagtattcctgctggaccctctgcccacactgccggtgtgaagattctt 560

                                                                       
Query: 361 tcacagtgtccttgcggtacattgagacatcccagcttcttctctgtgatgatcggttgg 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacaatgtccttgcggtacattgagacatcccagcttcttctctgtgatgatcggttgg 620

                                                                       
Query: 421 gttcagacagaagaagaaacacacatcaggttcagaaaagtagatttactagactcacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcagacagaagaagaaacacacatcaggttcagaaaagtagatttactagactcacat 680

                      
Query: 481 gttacttgggg 491
           |||||||||||
Sbjct: 681 gttacttgggg 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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