BAC Information

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BAC

Clone NameMSMg01-419G05
Chromosome2 (Build37)
Map Location 74,404,480 - 74,404,953
singlet/doubletsinglet
Overlap geneLnp
Upstream geneChrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
Downstream geneLOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419G05.T7 (MSMg01no419_g05.b1)MSMg01-419G05.TJ (MSMg01no419_g05.g1)
ACCAG514501AG514502
length763743
length of high quality
(start - end)
69 (330 - 398)474 (74 - 547)
definitionCHROMAT_FILE: MSMg01no419_g05.b1 PHD_FILE: MSMg01no419_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:54 2005CHROMAT_FILE: MSMg01no419_g05.g1 PHD_FILE: MSMg01no419_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTCCATAATTGGGGCCGCTCAAAGAGTCTTATTTCTCCAGGAGCC
GCGGGAATCCACATTTTCTACATACATCGGTGGAANAGATGGAAGCATAA
ATTGAAATTCAATTTCCAGACATACCCCGATAAAGTGGCTATATGCTTTA
ATGGCCGTCCTGGGTTGGTACCTAAGGAAGTCCGTGGCTTTGGCAGCCTA
ACTTCCTCAGTTCCCTTAACAAGTAAGAACCTCTAAGATCAAAGCAGCAA
TAACCCAGTTGGCCAACATTTACACAAAAGGGGTGAGTGAAGAACTCCCC
CCCCCAACCCTGAGTTTATATTTTTTTAGCATGCCAGGTCTCAAACAGCC
AGCTGAAAACTTTTTTTCCCCTGTTTTCTGCTTTCTACATGTTGATTTGG
AGTTGCTTGGATATGGAAAGATCCATCTGGTTTTGTCTATTCCAGCTCCA
CCTCACACTGGAAGGTGAGTGAGTAACCAGGCTTCGCTCCATAACCCTGA
CCTGGATTCCCCCGGCATTTCTAGGACTTACCACAGTGTATACCTCCGGA
TTACCCTACTCTTTATTCCCCCCTACACTACTTTCGTTACCCCTAGCACT
ATTCCTGCCCTCCCTTTTACTTTTCCCCTCTTCGCCCCCACACGTTTTTT
ATACCAACCCTCTCCCCCTTTAGAACCCCTGTTTTCCGCGCCCTTTCCCT
TTCTTTCTTGTTTTCCTATTTGCCCCCACCCTTTTATCCCCCATTATTTT
ATTTTTCTCCCCC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGTGATTGGGTAGATAAAAATAGAGA
TAAGTTAACAAAGACATACAGTTAATTGGAGAGAAATATGTGCAATAAAG
GATATCAAGTGATGTGATTTAAAATAGGTTTCTTTACAAGGGTCCTGGAA
GGCCTCTTTTTAGGCAGTGGTATTTGAGTTGAGCATTGAGTGTGAAGAAC
AAGTACAGAAAAAGTTGAAGTTTATGAAGACTATATGGAGCATATAGTGG
CACATATACCTAGAAAGTTCTATATAAGGTATTATTTAAAAAATACTAGT
GGTAATTCTTTCTAATGGAGTGATTTTAAGTAGTTCTTTTATTCTATATG
TTTTCTGGTAATGTTTTCATTTTTTTTAAACACCTGTGTATACTTTATAT
TGTTAAAAACAAGGTCTAGGATTTGAAGGATTTGCTTCTAAAACTAGAAA
ATAGAAAATGTGTAGACTGAGAATTTGAGTATATAGTTTTTGAGGGGCAA
AGATGACAGGCATATTTTGTAATGTGTGATGGAGAGATAAATGCTGTAAG
GATTTTATGTTAAATTTAGTCTGGCATTATGATTCTCCCCTTTATTTGTT
AGCTTTTATTTCTTGTTTCTTACTATTTATTTTTTCAATTTCACTTTTTT
CTCTTTTTTTCGTCTTTCCCCGTAATTTCCTTTTCTCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_g05.g1 MSMg01no419_g05.g1 CHROMAT_FILE:
MSMg01no419_g05.g1 PHD_FILE: MSMg01no419_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:55 2005
         (474 letters)



>mm_chr2_74404280_74405153
          Length = 874

 Score =  909 bits (470), Expect = 0.0
 Identities = 473/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgattgggtagataaaaatagagataagttaacaaagacatacagttaattggagag 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctgtgattgggcagataaaaatagagataagttaacaaagacatacagttaattggagag 615

                                                                       
Query: 61  aaatatgtgcaataaaggatatcaagtgatgtgatttaaaataggtttctttacaagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aaatatgtgcaataaaggatatcaagtgatgtgatttaaaataggtttctttacaagggt 555

                                                                       
Query: 121 cctggaaggcctctttttaggcagtggtatttgagttgagcattgagtgtgaagaacaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cctggaaggcctctttttaggcagtggtatttgagttgagcattgagtgtgaagaacaag 495

                                                                       
Query: 181 tacagaaaaagttgaagtttatgaagactatatggagcatatagtggcacatatacctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tacagaaaaagttgaagtttatgaagactatatggagcatatagtggcacatatacctag 435

                                                                       
Query: 241 aaagttctatataaggtattatttaaaaaatactagtggtaattctttctaatggagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaagttctatataaggtattatttaaaaaatactagtggtaattctttctaatggagtga 375

                                                                       
Query: 301 ttttaagtagttcttttattctatatgttttctggtaatgttttcattttttttaaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttttaagtagttcttttattctatatgttttctggtaatgttttcattttttttaaacac 315

                                                                       
Query: 361 ctgtgtatactttatattgttaaaaacaaggtctaggatttgaaggatttgcttctaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctgtgtatactttatattgttaaaaacaaggtctaggatttgaaggatttgcttctaaaa 255

                                                                 
Query: 421 ctagaaaatagaaaatgtgtagactgagaatttgagtatatagtttttgagggg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctagaaaatagaaaatgtgtagactgagaatttgagtatatagtttttgagggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)