BAC Information

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BAC

Clone NameMSMg01-419G08
Chromosome2 (Build37)
Map Location 20,448,166 - 20,448,411
singlet/doubletsinglet
Overlap geneEtl4
Upstream gene4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419G08.T7 (MSMg01no419_g08.b1)MSMg01-419G08.TJ (MSMg01no419_g08.g1)
ACCAG514507AG514508
length779765
length of high quality
(start - end)
---245 (70 - 314)
definitionCHROMAT_FILE: MSMg01no419_g08.b1 PHD_FILE: MSMg01no419_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:55 2005CHROMAT_FILE: MSMg01no419_g08.g1 PHD_FILE: MSMg01no419_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTCTAAAATTTGGGGGCTGAAAGAGGACTATTTTCTAAGAGCGCGGG
AANCACTTTTTCTCCAATGAGAAATGGGANCTTTTTTGGGGTGGAAAGTG
GTAGAAAGGCGAAAAAAGTAAAGAAATTGGACCCTTAACCCCTGGAAAGG
GGGTTGGGTTGGTCCGGAAGGGGAAAAAGGGCCCTGCGTAATTTATACAC
TGTTGGGAAAGCACTAGAGGCAGCCTTTGATAAGCAGAGCACAACATATC
CTGAGATTTTTTTTTTAATCCCCAACTAGATAATATATTTGAAAAACACA
CCTTGAACTTATTTTTTTATTTTTTGGAGGCAAAAAAGTGCGTCCTGGTT
TTCATTTCTATCCCCACCCCCTATTGCCAAAGCCCCACTTGCCTTTTGTT
CCCCCCCATGTGCGCCTCCCTGCCTCTCCTTTTTCCCCTTTTTTTCCCCT
CTCTCCCCCCTTTTCCTTTTCCCCCCCCCTTTTTATTTTCTCTTTTACCC
CTTTCCCCTTTTTTTTCTCTTTTCCTTCCCTCTCCCCCTTCCCTTTTTCC
TTTTCCCCCCCCCCCTTCTTTTCTATTCTTCCCCATATCTTCCTCCCTAA
CCCTTTTCTCCCACCCCTTCCCCCCTTTCTTTTATCCCCTTTTCCCCCCC
CCTCCCTCCCTTTTTTTCTCCACCCTCTTTTATTTTTTTCTTTCCCCCCT
ACTCTCTTTCCCCCTTTCCCTCCTTTTTATCCCTCCATCTCTTTATATAC
CTCTTCTTTTATTATCTTTCTCCCCCTTG
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCCTTTTAGGTGAGCATAAAACCCAAGGAG
AGGCATGCATAAACAAGAGAAGGAACAGACAAAGGTCCATTTTGCCACTA
TTCCACAGTTACGGTGTCAGACCCAATGGGCCCGTTTCACATTATCTGTA
TGAAGAAAAGTGCATGCAGGGACTCTCAAGCTGTCAAACAGAATGGCAGT
TCTGTTTCTTGTTTGGAAAGAACTCTGGTGCTAAGATGTAAATATGGGTG
TGTCTGGCTGTTTGCTATTCTGGGAATCCTTGTCTAACAAAGTAGAGAAG
TTGTAGCCTAAAGACAAGGCCTGGGCAAGGCTGAAAGGCAGCCCTGTTTC
CTCTTCCTGCCCCTCCCAAACTCTTCCAGGGAGCCCACTTCCAGCAGGGC
AAAGAGCAAACAAGAGCTTCGAATGGAAAATCAGCCCTTATACACTCCCT
GGAGCACAAGTGATGGGGAGGGGTTAGCACCTTCCTTCCTCTTTTCCTCT
TCTTCCTCTTCTTCCCTTTTTATCCCTTTCTTCCCTTCTTTCTCTTTTTT
TTTACCCCCCTTCCCCCCCTTCTTTTCTTTTATCCTCTCTTACTCCCATT
TTTCTCTCTCCTTCTTCTCTCTCCTTCGACTCCTCCCCCTTCTCTTTCTA
TTCCCCCCATACCTAAGTTTATACATTTTTTCTTTCTTCTCCCCACCTTA
TTTTTTTCCTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_g08.g1 MSMg01no419_g08.g1 CHROMAT_FILE:
MSMg01no419_g08.g1 PHD_FILE: MSMg01no419_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:55 2005
         (245 letters)



>mm_chr2_20447966_20448611
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccttttaggtgagcataaaacccaaggagaggcatgcataaacaagagaaggaacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agccttttaggtgagcataaaacccaaggagaggcatgcataaacaagagaaggaacaga 387

                                                                       
Query: 61  caaaggtccattttgccactattccacagttacggtgtcagacccaa-tgggcccgtttc 119
           |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 386 caaaggtccattttgccactattccacagttatggtgtcagacccaagtgggccagtttc 327

                                                                       
Query: 120 acattatctgtatgaagaaaagtgcatgcagggactctcaagctgtcaaacagaatggca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acattatctgtatgaagaaaagtgcatgcagggactctcaagctgtcaaacagaatggca 267

                                                                       
Query: 180 gttctgtttcttgtttggaaagaactctggtgctaagatgtaaatatgggtgtgtctggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gttctgtttcttgtttggaaagaactctggtgctaagatgtaaatatgggtgtgtctggc 207

                 
Query: 240 tgtttg 245
           ||||||
Sbjct: 206 tgtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space:   150332
Effective search space used:   150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)