BAC Information

Click to search

BAC

Clone NameMSMg01-419I05
Chromosome2 (Build37)
Map Location 72,631,259 - 72,631,733
singlet/doubletsinglet
Overlap genenone
Upstream geneItga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419I05.T7 (MSMg01no419_i05.b1)MSMg01-419I05.TJ (MSMg01no419_i05.g1)
ACCAG514597AG514598
length734749
length of high quality
(start - end)
127 (333 - 459)497 (70 - 566)
definitionCHROMAT_FILE: MSMg01no419_i05.b1 PHD_FILE: MSMg01no419_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:05 2005CHROMAT_FILE: MSMg01no419_i05.g1 PHD_FILE: MSMg01no419_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACCCCCCCTCAAAAATTGCGGCGCTAAANGANNTACTATTTTCAAAAAA
CGNGNGGAANNNAGNACTTTTCACGAAATTACACTATCNCTTTGAGAAAA
AGTTAGGTCACTGGCCTTCACAGGAATCTCCCATCACCAAGGAAGAAAGA
AGTTTCTGACCGCAGGAGAAACCCGAATAGATACTTAGAACTATAGCTGA
GTTACACCCATATACCGGAATTTACAATGGTTTAAGAAGTAGACAGGGCT
GTGGTTTTATAGTATTACATTATTCATGAGATGGTTAGCTAGAACAGAAC
TCCCTAGTTAGAACCACGACTTGGGTTTGTTAGCCCTTGCCCTAGGAGTG
AAAAGTTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGGGC
TGACTTTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCGTT
TTCATTCCTCTGCTCTGCGTAAGAGTCATTAAGCATCCGGTTACCTCATT
TGTACCTTGCCGGTATGTCACCCCACTTCTCTTATTGTTTTTTTGCCTAT
ACAAGCCTTGATGGTCCAATCTTGAAAAATAACCACTTCTCATTTCCCCC
CTACCCCCCTCCCGGTGTGGTGCCCTGGTCGGCCCAATTTCCCCCCCAAA
TTTTTCGGCTTTTTCCCGGTTTTTTTTATTTTAATTCTATCTCCCCCCCT
TATGATCCCCCATTTGGTTTCTTATTAACGTCGC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGAAATTCCAGAGACCGAACTCCGGTTTTCAGGCTTTT
ATGGTAAGTGGTTTTCCCAGCTGAGCCATCACCGGCACTGTTTGTTGACT
TTGAACCGATCCATCTTAACTGGGTTGTTTCCACTGCTTGCAGAGTGTTG
CCCTGTATCACAACAGACCTTCCGACGGCCTGCTTTTCTAATCAGTGCCC
CTGGACTACGATCTGGGCATCGCATTACAATGTAGAGTCACCTTCTAGGT
CCGAGGCAGAGTCTGTTTTTTTTCCATGCGCTCTGGTCATGCCGGCCAAC
TCTTTGATGAAGGTTCTTAAGCCCCAGAAAACATTCTAAGATTATTTTTT
ATGCGGCTCTTTGGTTTCTTCGAGGCAGGGTCTTGCCATGTAGCCCAGGC
TGGTCTTAACGTGCCCTCATTCGGCCTCAGGTTCCTGAGTGGTGGAGTTA
CAGCCTGTGCCCAATAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTTCTTCCTTTCCTCCCGTTT
CTCTTCTTTCTTTTTTCTTTCCCTCCCCCCCTCCCTATCTTACTTTTCCC
TTTCTCTTTTTCTTTAACTATCTCCTTTTTCTCTTCCTTTCTTTTTCTCT
ATTTTTCCCTTCTTCTCTATTATCCCTTACTATCTTTCTTTTCTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_i05.g1 MSMg01no419_i05.g1 CHROMAT_FILE:
MSMg01no419_i05.g1 PHD_FILE: MSMg01no419_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:05 2005
         (497 letters)



>mm_chr2_72631123_72632019
          Length = 897

 Score =  864 bits (447), Expect = 0.0
 Identities = 468/475 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagagaccgaactccggttttcaggcttttatggtaagtggttttcccagctgagccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ccagagaccgaactccggttttcaggcttttatggtaagtggttttcccagctgagccat 552

                                                                       
Query: 61  caccggcactgtttgttgactttgaaccgatccatcttaactgggttgtttccactgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 caccggcactgtttgttgactttgaaccgatccatcttaactgggttgtttccactgctt 492

                                                                       
Query: 121 gcagagtgttgccctgtatcacaacagaccttccgacggcctgcttttctaatcagtgcc 180
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 491 gcagagtgttgccctgtatcacagcagaccttccgacggcctgcttttctaatctgtgcc 432

                                                                       
Query: 181 cctggactacgatctgggcatcgcattacaatgtagagtcaccttctaggtccgaggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 431 cctggactacgatctgggcatcgcattacaatgtagagtcaccttctaggttcgaggcag 372

                                                                       
Query: 241 agtctgttttttttccatgcgctctggtcatgccggccaactctttgatgaaggttctta 300
           |||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agtctgtgaatttcccatgcgctctggtcatgccggccaactctttgatgaaggttctta 312

                                                                       
Query: 301 agccccagaaaacattctaagattattttttatgcggctctttggtttcttcgaggcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agccccagaaaacattctaagattattttttatgcggctctttggtttcttcgaggcagg 252

                                                                       
Query: 361 gtcttgccatgtagcccaggctggtcttaacgtgccctcattcggcctcaggttcctgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtcttgccatgtagcccaggctggtcttaacgtgccctcattcggcctcaggttcctgag 192

                                                                  
Query: 421 tggtggagttacagcctgtgcccaatagttctctctctctctctctctctctctc 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tggtggagttacagcctgtgcccaatagttctctctctctctctctctctctctc 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)