MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-419M15
Chromosome	2 (Build37)
Map Location	168,370,200 - 168,370,580
singlet/doublet	singlet
Overlap gene	Nfatc2
Upstream gene	Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952
Downstream gene	Atp9a, Sall4, Zfp64, LOC100043909
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ube2v1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66589 MGI:1913839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI840826 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:407243 MGI:2142624
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cebpb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12608 MGI:88373
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043728 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043728
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs

name	Ptpn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19246 MGI:97805
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310033K02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69553 MGI:1916803
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pard6b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58220 MGI:2135605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adnp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11538 MGI:1338758
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dpm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13480 MGI:1330239
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mocs3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69372 MGI:1916622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 35 ESTs, 6 Proteins

name	LOC100043908 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043908
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Kcng1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241794 MGI:3616086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668952 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668952
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Nfatc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18019 MGI:102463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Atp9a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11981 MGI:1330826
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sall4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99377 MGI:2139360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Zfp64 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22722 MGI:107342
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043909 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043909
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Ube2v1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326404 GeneID:66589 MGI:1913839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-conjugating enzyme E2 variant 1 transcript_id : NM_023230.2

name	AI840826 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130157 GeneID:407243 MGI:2142624
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI840826 transcript_id : NM_145538.2

name	Cebpb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227244 GeneID:12608 MGI:88373
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCAAT/enhancer binding protein (C/EBP), beta transcript_id : NM_009883.2

name	LOC100043728 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250116 GeneID:100043728
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs product : hypothetical protein LOC100043728 transcript_id : XM_001480832.1

name	Ptpn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133505844 GeneID:19246 MGI:97805
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, non-receptor type 1 transcript_id : NM_011201.3

name	2310033K02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123959721 GeneID:69553 MGI:1916803
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310033K02 gene transcript_id : NM_001080708.1

name	Pard6b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946765 GeneID:58220 MGI:2135605
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : par-6 (partitioning defective 6) homolog beta (C. elegans) transcript_id : NM_021409.1

name	Adnp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:90093348 GeneID:11538 MGI:1338758
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : activity-dependent neuroprotective protein transcript_id : NM_009628.2

name	Dpm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114688043 GeneID:13480 MGI:1330239
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dolichol-phosphate (beta-D) mannosyltransferase 1 transcript_id : NM_010072.3

name	Mocs3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94367439 GeneID:69372 MGI:1916622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 35 ESTs, 6 Proteins product : molybdenum cofactor synthesis 3 transcript_id : XM_130596.6

name	Kcng1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487486 GeneID:241794 MGI:3616086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium voltage-gated channel, subfamily G, member 1 transcript_id : NM_001081134.1

name	Nfatc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:81295417 GeneID:18019 MGI:102463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 transcript_id : NM_010899.2

name	Nfatc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:81295411 GeneID:18019 MGI:102463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 transcript_id : NM_001037178.1

name	Nfatc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:81295420 GeneID:18019 MGI:102463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 transcript_id : NM_001037177.1

name	Atp9a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130946 GeneID:11981 MGI:1330826
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, class II, type 9A transcript_id : NM_015731.3

name	Sall4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117553632 GeneID:99377 MGI:2139360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sal-like 4 (Drosophila) transcript_id : NM_201396.2

name	Sall4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117553622 GeneID:99377 MGI:2139360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sal-like 4 (Drosophila) transcript_id : NM_201395.2

name	Sall4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117553630 GeneID:99377 MGI:2139360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sal-like 4 (Drosophila) transcript_id : NM_175303.3

name	Zfp64 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6677622 GeneID:22722 MGI:107342
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 64 transcript_id : NM_009564.1

name	Ube2v1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42741690 CCDS:CCDS17103.1 GeneID:66589 MGI:1913839
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ubiquitin-conjugating enzyme E2 variant 1 protein_id : NP_075719.1

name	AI840826 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704060 CCDS:CCDS17104.1 GeneID:407243 MGI:2142624
definition	codon_start : 1 product : ubiquitin-conjugating enzyme variant Kua protein_id : NP_663513.1

name	Cebpb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753404 CCDS:CCDS17105.1 GeneID:12608 MGI:88373
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0046982 - protein heterodimerization activity [Evidence IDA]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0006916 - anti-apoptosis [Evidence IDA]; GO:0001892 - embryonic placenta development [Evidence IGI]; GO:0045444 - fat cell differentiation [Evidence IDA]; GO:0006917 - induction of apoptosis [Evidence IDA]; GO:0030182 - neuron differentiation [Evidence IDA]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0045408 - regulation of interleukin-6 biosynthesis [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 function : DNA binding protein note : C/EBP BETA; nuclear protein Il6; CCAAT/enhancer binding protein (C/EBP) beta product : CCAAT/enhancer binding protein beta protein_id : NP_034013.1

name	LOC100043728 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250117 GeneID:100043728
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480882.1

name	Ptpn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133505845 CCDS:CCDS17107.1 GeneID:19246 MGI:97805
definition	EC_number : 3.1.3.48 GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0008286 - insulin receptor signaling pathway [Evidence IMP]; GO:0006470 - protein amino acid dephosphorylation [Evidence IMP] codon_start : 1 note : protein-protein-tyrosine phosphatase HA2 product : protein tyrosine phosphatase, non-receptor type 1 protein_id : NP_035331.3

name	2310033K02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:123959722 GeneID:69553 MGI:1916803
definition	codon_start : 1 product : hypothetical protein LOC69553 protein_id : NP_001074177.1

name	Pard6b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946766 CCDS:CCDS17108.1 GeneID:58220 MGI:2135605
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0005938 - cell cortex [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence ISS]; GO:0005923 - tight junction [Evidence ISS] [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence IEA] GO_process : GO:0007409 - axonogenesis [Evidence ISS]; GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007163 - establishment and/or maintenance of cell polarity [Evidence ISS]; GO:0007043 - intercellular junction assembly [Evidence ISS]; GO:0030334 - regulation of cell migration [Evidence ISS] codon_start : 1 exception : mismatches in translation note : partitioning-defective protein 6, beta product : par-6 (partitioning defective 6) homolog beta protein_id : NP_067384.1

name	Adnp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:90093349 GeneID:11538 MGI:1338758
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005184 - neuropeptide hormone activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007218 - neuropeptide signaling pathway [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : activity-dependent neuroprotective protein protein_id : NP_033758.2

name	Dpm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753670 CCDS:CCDS17109.1 GeneID:13480 MGI:1330239
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence ISS]; GO:0031501 - mannosyltransferase complex [Evidence ISS] GO_function : GO:0004582 - dolichyl-phosphate beta-D-mannosyltransferase activity [Evidence ISS] [Evidence IEA]; GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence ISS]; GO:0000030 - mannosyltransferase activity [Evidence IMP]; GO:0005515 - protein binding [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006506 - GPI anchor biosynthesis [Evidence ISS]; GO:0018406 - protein amino acid C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan [Evidence ISS]; GO:0035269 - protein amino acid O-linked mannosylation [Evidence ISS] codon_start : 1 product : dolichol-phosphate (beta-D) mannosyltransferase 1 protein_id : NP_034202.1

name	Mocs3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82887378 GeneID:69372 MGI:1916622
definition	codon_start : 1 product : molybdenum cofactor synthesis 3 protein_id : XP_130596.4

name	Kcng1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487487 GeneID:241794 MGI:3616086
definition	codon_start : 1 note : orthologue of H. sapiens potassium voltage-gated channel, subfamily G, member 1 (KCNG1) product : potassium voltage-gated channel, subfamily G, member 1 protein_id : NP_001074603.1

name	Nfatc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:81295418 CCDS:CCDS17112.1 GeneID:18019 MGI:102463
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence ISS] GO_process : GO:0001816 - cytokine production [Evidence IDA]; GO:0045941 - positive regulation of transcription [Evidence ISS]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 isoform a protein_id : NP_035029.2

name	Nfatc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:81295421 CCDS:CCDS17113.1 GeneID:18019 MGI:102463
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence ISS] GO_process : GO:0001816 - cytokine production [Evidence IDA]; GO:0045941 - positive regulation of transcription [Evidence ISS]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 isoform b protein_id : NP_001032254.1

name	Nfatc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:81295412 CCDS:CCDS17114.1 GeneID:18019 MGI:102463
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence ISS] GO_process : GO:0001816 - cytokine production [Evidence IDA]; GO:0045941 - positive regulation of transcription [Evidence ISS]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant 3 product : nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 isoform c protein_id : NP_001032255.1

name	Atp9a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40795674 GeneID:11981 MGI:1330826
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : ATPase, class 2; ATPase 9A, p type; Class II; ATPase 9A, class II product : ATPase, class II, type 9A protein_id : NP_056546.2

name	Sall4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117553633 CCDS:CCDS17117.1 GeneID:99377 MGI:2139360
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IC] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030326 - embryonic limb morphogenesis [Evidence IGI] [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [Evidence IDA] codon_start : 1 note : isoform c is encoded by transcript variant c product : sal-like 4 isoform c protein_id : NP_958798.2

name	Sall4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117553623 CCDS:CCDS17116.1 GeneID:99377 MGI:2139360
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IC] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030326 - embryonic limb morphogenesis [Evidence IGI] [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [Evidence IDA] codon_start : 1 note : isoform b is encoded by transcript variant b product : sal-like 4 isoform b protein_id : NP_958797.2

name	Sall4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117553631 CCDS:CCDS17115.1 GeneID:99377 MGI:2139360
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IC] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030326 - embryonic limb morphogenesis [Evidence IGI] [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [Evidence IDA] codon_start : 1 note : isoform a is encoded by transcript variant a product : sal-like 4 isoform a protein_id : NP_780512.2

name	Zfp64 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677623 GeneID:22722 MGI:107342
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : zinc finger protein 64 protein_id : NP_033590.1

name	LOC100043908 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043908
definition	number : 1 pseudo : _no_value

name	LOC668952 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668952
definition	number : 1 pseudo : _no_value

name	LOC100043909 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043909
definition	number : 1 pseudo : _no_value

clone name	MSMg01-440I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184L21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-059B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241L23
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-419M15.T7 (MSMg01no419_m15.b1)	MSMg01-419M15.TJ (MSMg01no419_m15.g1)
ACC	AG514807	AG514808
length	1,035	730
length of high quality (start - end)	---	381 (66 - 446)
definition	CHROMAT_FILE: MSMg01no419_m15.b1 PHD_FILE: MSMg01no419_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:26 2005	CHROMAT_FILE: MSMg01no419_m15.g1 PHD_FILE: MSMg01no419_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:26 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	GGCGCCGGGCGCGAGGCGCGGTTCTTTACGGTACACGCGGCTTCTACCTC ATCTAACGCCGCCGTCGAATGCGCGGAGATGCCTCTTATAAGCGCTTTGC CTCACCGGCCCCGCGCCCCTTCGTGTGTTATAAACGCTTGCCCATTTTAA TAAACCCCCGCGCCTACGTTGCTTTACCGTACGTTTCTCACCCGACTTTC GTTTTTCGCCTCGCGGCTCTTTTTATTAATATTCACGCGGCGTACGTCGA ACGGCTTGTATCGTAGTTAGGGCCGGCGCGGCCCGCATAACTAGTTTTGT ATCGGCGTTTTTCGTCCGGGCGTACGCGTCTACCACTTATTAATCGATCG GCCCCTCCCGGCGGGCTCTGTATATTGCGAGTTAAATCCGCTATCCCGAC CATATTGTTTGTGCGATTGGTCATATGCATCCGCTTTATACAGAAATGGT AATAAAGGTAAAATGACCATTAAGGAGATTCCGGATAGTATACTCCCTGA ATAAAGCAACACATTCCACTTTTCCTTTGTTCCCCCATTAGTCTCCCCCG CTCCTCTTTTCGCTTCCACCCAAGCCCAAAGATGCCGTGATGTTACCGGG ATGGCACGAACAATATTATCGGGCCGTGTCACACTCCGCATTTCTGTCTA TATTTACGACACCCCCGCGCCCGCCCGAATTACCATGTAACGCACGTATA AGCGTGGCGCCCTTCCGCCCAGTCCGGAGTTAACGCGTCCCACTCCAAAT AGACAGACACACGTGGCGCCTAAAGTACTATGATTTTTATTATCCGCGAG GTGCGCCTAGAGATTGTATATACGTCCAACAACTAGGATGTGATTACCCC ATCGGTTAGTTTCTTGTAGCCGCACTTAGCGCACGTCTCCCCTAGTTATT TTACCCGCTCCACGTGGGCGGGTTGGTGGCCACATATAAATATAGCAACC GCGGTGCCCCGTTCTTTTGTGTGTATTGAAAGTAACACCCGGGCGCGTTG ATGCGGCCGGTTTAAGATTTATTATATCCGGCGGN	TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXTTGGTATTAAATGCAGGTCGTCACACTTGTTCAGC GAGACTGTGGGTCTCCTCAGCCAAGGACTTTGGTTTTTGATGGGAGTGGG ACGTCTGTTCTTGAGGGATCCAAGTGGAAGAGTGGCAGGCTCTGGCCAAA GGTAGTGGAGGTCATTTTAGCCACTACCTTGTGGTAGATGAGATGGAAGG AAGGCAGCCAGGCAGTTTCTTTGATCTGAGAACCAGGTGGCAGATTTGAG TGGCATTTATTATATTAGATGGGCAGGGCTCTGCGGTGATCCAATGGAAG TGAAGCAGAGGGGGCTTCATTGAAATGGAGTAGTGTTTACTGATTGAGTA TGCTTGTCGGGGAGTAGGGAAGAGAGTGTCGTGTGTGTGTGTGTGTNNTT NTNTTTTNNNNTTTTTTTTTCTTCGTTCTTTTTTGTGTTTTTTCTCTTTC TCTCTCTTCTTGTGCTTCGTTTTCTCGCGTTTTTTTTTCCCCTCTCTTCT CTTTTTTCCCTCTTTTTTCCTTTTTTTCCTTTTCTTTTCTTTTCTTTTCT CCTCTCTTTTTCCTTTTTTCCCTTTTCCCCTTTTTTTTTTTCTTTTTCTT TCCCTTTTCCTTTTTCTCTTTTTTTTTTCTTCTTTTTCTTNCTCTCTCTT TTTTCTCTCCCTTTTTTCTTTCTTCCTTCN
quality values	Open. Hide. 6 6 6 6 6 6 6 10 10 10 6 6 6 6 6 8 8 8 11 8 12 12 12 11 9 9 6 6 6 6 8 8 11 10 11 8 10 6 7 7 9 8 8 8 8 8 8 8 8 10 10 9 9 9 8 8 8 8 8 8 8 6 7 6 8 8 8 8 8 8 6 6 8 6 6 6 6 8 6 8 8 8 8 11 12 10 9 9 6 6 6 6 6 6 8 8 10 10 8 8 8 7 6 6 8 8 8 10 10 9 10 10 8 8 8 8 9 9 8 8 8 8 8 10 6 7 8 15 11 11 8 8 8 8 8 8 8 8 8 8 10 10 11 11 11 11 9 8 8 8 8 10 10 15 15 13 8 8 6 6 6 8 8 8 8 8 8 9 9 9 10 10 10 8 8 8 8 8 10 8 8 8 8 8 8 13 13 10 8 8 8 10 8 10 10 10 10 8 8 6 6 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 6 6 7 13 17 8 8 8 8 8 8 8 8 11 11 8 9 11 11 8 8 8 8 8 8 9 8 8 8 8 10 10 15 14 14 8 8 8 6 8 6 6 6 8 8 6 6 6 6 10 10 8 6 6 8 8 8 8 8 8 12 15 11 10 11 11 12 10 10 8 8 8 8 8 10 10 6 6 6 8 8 6 6 6 8 8 10 10 8 8 8 10 10 12 10 11 9 9 9 8 8 8 10 8 8 8 8 8 8 8 8 8 8 10 8 8 9 8 8 8 12 12 6 8 6 6 6 6 8 6 8 8 8 8 8 10 6 6 6 6 6 8 11 8 8 8 8 8 8 11 11 15 8 8 8 8 8 10 10 10 10 8 8 9 8 8 6 6 7 6 10 11 11 8 8 8 8 8 8 8 8 8 6 6 8 8 9 10 10 10 10 10 10 10 13 9 8 8 8 6 6 8 8 10 8 8 6 6 8 6 6 6 6 6 6 6 10 10 13 10 8 6 6 6 6 6 6 6 8 6 6 8 8 6 7 6 8 12 13 8 8 6 6 6 10 9 10 12 10 10 9 9 9 9 6 8 6 6 6 6 6 6 6 10 6 9 8 8 8 8 9 9 9 6 6 6 6 8 8 9 7 7 7 7 8 8 8 8 8 8 8 6 6 6 6 8 8 9 9 9 9 11 12 11 11 13 11 11 10 10 10 8 6 6 6 6 9 13 10 8 8 8 8 8 8 8 8 10 8 11 12 10 10 10 10 10 11 11 9 9 9 8 8 8 8 8 10 10 8 8 8 8 10 10 8 8 9 10 8 8 8 8 8 8 8 8 10 10 10 12 10 10 8 6 8 6 6 8 8 8 6 6 8 8 9 8 8 8 8 8 8 8 8 8 14 10 8 8 6 8 8 8 8 6 6 6 6 6 8 8 8 8 8 8 8 6 6 8 8 12 10 8 8 8 8 10 8 7 7 8 8 8 11 11 8 8 8 12 8 8 6 6 8 6 6 6 8 11 11 10 10 8 8 8 11 10 8 7 6 6 6 8 8 10 11 11 11 13 11 11 11 8 8 8 8 8 8 10 10 10 10 10 8 8 8 8 8 8 6 6 8 8 9 8 8 8 8 8 8 9 9 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 10 10 8 6 6 6 6 8 8 8 8 8 8 10 8 8 6 6 6 6 9 8 10 10 10 8 8 8 8 8 8 8 6 6 6 6 8 6 8 8 8 8 10 10 10 10 8 8 6 6 8 8 8 8 8 6 6 8 6 10 10 11 6 6 6 6 6 6 8 7 11 9 10 10 8 6 6 8 8 8 8 9 8 8 8 8 8 8 11 11 11 11 10 11 9 9 9 9 9 6 6 7 7 10 8 10 11 10 10 9 9 9 9 9 11 13 10 10 6 6 8 8 6 6 8 8 8 8 8 7 7 7 8 8 8 6 6 10 10 10 9 9 9 10 9 10 8 8 8 7 9 9 9 9 9 15 12 15 10 8 8 8 8 8 8 8 9 11 10 10 10 6 6 6 6 6 6 8 6 7 10 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 9 9 10 8 8 6 6 8 6 9 8 8 8 6 6 8 6 6 6 7 10 8 8 8 8 8 8 8 8 10 9 8 8 8 6 6 6 6 8 8 8 6 6 6 6 6 6 10 10 7 6 8 8 8 8 8 8 8 8 8 8 8 6 8 8 8 8 8 8 8 8 6 6 8 8 8 8 6 8 6 6 8 8 8 8 8 13 18 15 9 9 9 8 8 8 8 3 0	Open. Hide. 7 7 7 7 8 8 24 27 32 37 39 39 32 32 37 32 31 37 37 17 27 9 9 9 10 9 9 9 11 11 13 16 19 29 28 25 30 39 30 33 30 33 33 33 37 37 37 30 21 12 9 9 9 12 19 14 12 15 23 18 30 33 33 33 33 43 53 53 53 53 53 57 57 57 53 53 47 47 47 47 53 53 57 57 50 68 68 68 68 68 68 68 68 68 51 50 47 47 47 50 57 68 68 68 68 57 54 57 48 48 57 57 57 57 68 68 57 68 68 68 68 68 68 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 48 48 41 41 41 48 42 47 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 53 50 57 57 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 31 26 22 16 11 11 11 11 11 11 23 15 20 20 34 34 50 59 59 59 59 59 59 59 59 59 59 57 57 48 48 48 48 57 57 57 57 59 68 68 68 68 68 59 59 59 59 59 54 54 54 59 59 54 59 54 59 59 68 68 59 59 59 59 59 59 59 68 68 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 44 40 30 30 30 33 28 40 40 48 48 48 57 59 59 59 48 48 48 59 59 59 59 59 59 59 57 48 48 48 48 59 59 59 59 35 35 31 35 37 25 27 3 0 0 3 3 0 3 0 3 8 8 3 0 0 0 0 3 9 13 13 11 17 14 22 10 10 8 12 10 11 8 9 9 9 9 12 12 12 12 12 13 9 7 7 8 6 8 6 6 8 10 10 8 6 6 10 8 8 8 8 8 10 8 8 8 8 8 8 8 8 13 10 8 8 8 11 8 8 13 12 15 10 10 9 9 12 8 7 9 9 9 17 10 10 9 9 10 6 8 8 8 9 8 10 10 10 10 10 21 21 12 11 11 8 10 6 7 13 8 10 10 12 12 13 10 10 10 13 10 10 10 11 11 14 14 15 12 8 8 8 8 15 8 8 8 12 12 10 10 8 10 8 9 10 8 8 6 6 7 6 7 7 10 8 8 10 10 8 8 8 13 8 8 8 9 10 10 10 11 15 11 11 11 15 22 29 25 22 17 15 15 17 22 12 10 10 10 8 8 20 19 19 15 11 11 8 8 8 9 9 14 13 14 14 16 10 8 10 10 8 8 8 10 10 12 13 20 14 16 16 12 12 9 9 9 14 10 9 9 11 10 10 8 10 3 0 3 8 8 15 13 10 8 8 8 8 13 10 10 10 11 15 11 14 14 14 10 11 10 8 9 10 13 13 10 10 8 8 10 13 15 13 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no419_m15.g1 MSMg01no419_m15.g1 CHROMAT_FILE:
MSMg01no419_m15.g1 PHD_FILE: MSMg01no419_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:26 2005
         (381 letters)



>mm_chr2_168370000_168370780
          Length = 781

 Score =  667 bits (345), Expect = 0.0
 Identities = 372/381 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtattaaatgcaggtcgtcacacttgttcagcgagactgtgggtctcctcagccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttggtattaaatgcaggtcgtcacacttgttcagcgagactgtgggtctcctcagccaag 522

                                                                       
Query: 61  gactttggtttttgatgggagtgggacgtctgttcttgagggatccaagtggaagagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gactttggtttttgatgggagtgggacgtctgttcttgagggatccaagtggaagagtgg 462

                                                                       
Query: 121 caggctctggccaaaggtagtggaggtcattttagccactaccttgtggtagatgagatg 180
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 461 caggctctggccaaaggtagtggaggtcattttagccactatcttgtggtagatgaaatg 402

                                                                       
Query: 181 gaaggaaggcagccaggcagtttctttgatctgagaaccaggtggcagatttgagtggca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 401 aaaggaaggcagccaggcagtttctttgatctgagaaccaggtggcagatttgagtggta 342

                                                                       
Query: 241 tttattatattagatgggcagggctctgcggtgatccaatggaagtgaagcagagggggc 300
           ||||  | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttaggaaattagatgggcggggctctgcggtgatccaatggaagtgaagcagagggggc 282

                                                                       
Query: 301 ttcattgaaatggagtagtgtttactgattgagtatgcttgtcggggagtagggaagaga 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttcattgaaatagagtagtgtttactgattgagtatgcttgtcggggagtagggaagaga 222

                                
Query: 361 gtgtcgtgtgtgtgtgtgtgt 381
           |||||||||||||||||||||
Sbjct: 221 gtgtcgtgtgtgtgtgtgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information