BAC Information

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BAC

Clone NameMSMg01-419N12
Chromosome2 (Build37)
Map Location 79,982,387 - 80,148,222
singlet/doubletdoublet
Overlap genePrdx6-rs1
Upstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a, LOC668005
Downstream geneDnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419N12.T7 (MSMg01no419_n12.b1)MSMg01-419N12.TJ (MSMg01no419_n12.g1)
ACCAG514849AG514850
length785771
length of high quality
(start - end)
350 (94 - 443)245 (69 - 313)
definitionCHROMAT_FILE: MSMg01no419_n12.b1 PHD_FILE: MSMg01no419_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:30 2005CHROMAT_FILE: MSMg01no419_n12.g1 PHD_FILE: MSMg01no419_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,147,876 - 80,148,222)(79,982,387 - 79,982,631)
sequence
NTTACAACTTTAAAAATTGGGGGGCGGAAAAGAANCCCATTTACCAAAGA
AGNCCGGGAAATCAGTTTTCCCCCAAGCTCAGGGGATAGTTCAAGCCTCA
TATGCAATATCTGCAACCATGGGGCTTAGATCCAGATCCCTAATTCATGC
CAGAGAGGAACTAGCATTTTTGCCATCAAAACCCCATAGCGCAAGGGCCA
GCCTGCATTTTCAGAATCTCTTATCTAGTTGTCTAGAGGCTTGGCTCCAT
ACCAGGGTATAACAGGCAGCAACATGCACACCTTCTGTTTCCTCAGGATA
GTTCAGGCTGTTACATGTAATTCTTATCATTAGGCATTCACTTAGCAACT
TGTACAAAAACCAGGGCATGTGGAACAGCATACCAGGTAGCATAGATCAG
AAACCAACGCTGAAGTGGGAAAATTTACCTATCAGGGCCAGCACACCGAG
TAGCACAAATAAAAAACTTATGGCTGAAGCTTGGAAAATTCAAGTAGGGG
AGCATGCTCCAAATCCAAGTTGAAAAGGATAATGTGCTGCCGGCTTGCAG
AAACAACCTTTTAAAACCCCCCAACCTTTTTTTTAAACAATTTTTTAATC
TTTATTAAAAAATTTCCCCCCTTAAATTTCCAGGGTTCCCCAAAAACTCC
TATAATTCCCCCCCCTATTTCTCCACCCCCCTTCCCTTTTTTTTTTCCCC
GGCCCCCCCCCCCGCCGTATAAATTTTTTTATACACAGCCCTCCTTTTCT
TCGCCCCCCCCCACCTCTTCTTCATTATCCCCTTG
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGCTGGCGAGATACTAGCTCGGGATAATATA
CAGGTATAAAAGCAACATTTTGTAACTAGGATATGGAAATTTAAATTGCC
TCAGAAAAATAAGAACTAAAAAAGGCAAGGTTAATTTGCCAAAGTAATAC
ACATATTGACTTCAATGCTCTTTGCACGCTCGATGGATGGCTCATTTTCC
TTTGAATAAACTAGTTCTGTGAGAATACGATGAAATTTCCTACCAATATA
ATTAAAAGATGTCTTTTTTAAAGCCTCCACACATGTGTTCATACATGCAT
AATATTGTACATAATGGTCAAGAAGAAGGTGGCCTATATCAAAAGCTCCC
TTCTGAGTCTCTTACCACTCCTACTCTCCCTAGCACAAGTCCACCCTCAT
TGGCTTCTTCTTTGCACTTTCAATAAGCTCTGAGACAATTTTCTCTATCT
TCAAATGTATTCCTCAACCAGGCCTGCCATTTAATCTAAAATATGAGATG
ATGTTGAGTGACATCTCCAAAGCCATTACACTACACTTAAAATCCTTGGT
ATGCTAGGCTGCTGTTTCCTCTCCAAATGAAGGCTCCCAAACCAAGTGNA
CCTTAATGTCCCTTGCCTTCCGAAGAGGCCTGCCCACCTAAAAAGGATGC
TTTATTATGAGCTAATAAGCCCAAAGCCCCCGGGGAACGGTTGGGTCCCT
CCAATATGGGAAAAACAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_n12.b1 MSMg01no419_n12.b1 CHROMAT_FILE:
MSMg01no419_n12.b1 PHD_FILE: MSMg01no419_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:30 2005
         (350 letters)



>mm_chr2_80147676_80148425
          Length = 750

 Score =  640 bits (331), Expect = 0.0
 Identities = 343/347 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctcatatgcaatatctgcaaccatggggcttagatccagatccctaattcatgccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agcctcatatgcaatatctgcaaccatggggcttagatccagatccctaattcatgccag 488

                                                                       
Query: 61  agaggaactagcatttttgccatcaaaaccccatagcgcaagggccagcctgcattttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agaggaactagcatttttgccatcaaaaccccatagcgcaagggccagcctgcattttca 428

                                                                       
Query: 121 gaatctcttatctagttgtctagaggcttggctccataccagggtataacaggcagcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaatctcttatctagttgtctagaggcttggctccataccagggtataacaggcagcaac 368

                                                                       
Query: 181 atgcacaccttctgtttcctcaggatagttcaggctgttacatgtaattcttatcattag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 367 atgcacaccttctgtttcctcaggatagttcaggctgttacatgtaattctgaccattag 308

                                                                       
Query: 241 gcattcacttagcaacttgtacaaaaaccagggcatgtggaacagcataccaggtagcat 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 307 gcattcacttagcaacttgtacaaaaaccagggcatgtgggacagcataccaggtagcat 248

                                                          
Query: 301 agatcagaaaccaacgctgaagtgggaaaatttacctatcagggcca 347
           |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 247 agatcagaaaccaacgctgaagtgggaaaattcacctatcagggcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no419_n12.g1 MSMg01no419_n12.g1 CHROMAT_FILE:
MSMg01no419_n12.g1 PHD_FILE: MSMg01no419_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:30 2005
         (245 letters)



>mm_chr2_79982187_79982831
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgctggcgagatactagctcgggataatatacaggtataaaagcaacattttgtaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctggcgagatactagctcgggataatatacaggtataaaagcaacattttgtaacta 260

                                                                       
Query: 61  ggatatggaaatttaaattgcctcagaaaaataagaactaaaaaaggcaaggttaatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatatggaaatttaaattgcctcagaaaaataagaactaaaaaaggcaaggttaatttg 320

                                                                       
Query: 121 ccaaagtaatacacatattgacttcaatgctctttgcacgctcgatggatggctcatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaagtaatacacatattgacttcaatgctctttgcacgctcgatggatggctcatttt 380

                                                                       
Query: 181 cctttgaataaactagttctgtgagaatacgatgaaatttcctaccaatataattaaaag 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 cctttgaataaactagttctgtgagaatacgatgaaatttccaaccaatataattaaaag 440

                
Query: 241 atgtc 245
           |||||
Sbjct: 441 atgtc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)