MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-420D17
Chromosome	2 (Build37)
Map Location	172,658,693 - 172,658,827
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
Downstream gene	Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100043744 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043744
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Cbln4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228942 MGI:2154433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mc3r (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17201 MGI:96929
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2010011I20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67017 MGI:1914267
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aurka (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20878 MGI:894678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cstf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67337 MGI:1914587
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	F730031O20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320664 MGI:2444482
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	2410001C21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66404 MGI:1913654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A330041C17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:654821 MGI:3606143
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700029J11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76426 MGI:1923676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs, 2 Proteins

name	LOC629957 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629957
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 494 ESTs, 5 Proteins

name	Tcfap2c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21420 MGI:106032
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043750 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043750
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Bmp7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12162 MGI:103302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043751 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Spo11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26972 MGI:1349669
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rae1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66679 MGI:1913929
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56190 MGI:1889294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ctcfl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664799 MGI:3652571
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG619800 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:619800 MGI:3648376
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins

name	Pck1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18534 MGI:97501
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58203 MGI:1927449
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmepai (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:65112 MGI:1929600
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700021F07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72221 MGI:1919471
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 2 Proteins

name	1700030G11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70065 MGI:1917315
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC100043911 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043911
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Rab22a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19334 MGI:105072
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700010B08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75485 MGI:1922735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 14 ESTs

name	Vapb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56491 MGI:1928744
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC620189 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620189
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100043744 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250137 GeneID:100043744
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : similar to retinitis pigmentosa GTPase regulator transcript_id : XM_001480868.1

name	Cbln4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345266 GeneID:228942 MGI:2154433
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cerebellin 4 precursor protein transcript_id : NM_175631.2

name	Mc3r (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371951 GeneID:17201 MGI:96929
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : melanocortin 3 receptor transcript_id : NM_008561.3

name	2010011I20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353140 GeneID:67017 MGI:1914267
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2010011I20 gene transcript_id : NM_025912.3

name	Aurka (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130130 GeneID:20878 MGI:894678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aurora kinase A transcript_id : NM_011497.3

name	Cstf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892406 GeneID:67337 MGI:1914587
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cleavage stimulation factor, 3' pre-RNA, subunit 1 transcript_id : NM_024199.2

name	F730031O20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131077 GeneID:320664 MGI:2444482
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA F730031O20 gene transcript_id : NM_001033538.2

name	F730031O20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249363 GeneID:320664 MGI:2444482
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA F730031O20 gene transcript_id : NM_001080820.1

name	2410001C21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803188 GeneID:66404 MGI:1913654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410001C21 gene transcript_id : NM_025542.2

name	A330041C17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386907 GeneID:654821 MGI:3606143
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A330041C17 gene transcript_id : NM_001039560.2

name	1700029J11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94367448 GeneID:76426 MGI:1923676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs, 2 Proteins product : RIKEN cDNA 1700029J11 gene transcript_id : XM_130728.5

name	LOC629957 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250265 GeneID:629957
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 494 ESTs, 5 Proteins product : similar to 40S ribosomal protein S29 transcript_id : XM_894924.3

name	Tcfap2c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678252 GeneID:21420 MGI:106032
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor AP-2, gamma transcript_id : NM_009335.1

name	LOC100043750 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250139 GeneID:100043750
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to gamma-aminobutyric acid A receptor, epsilon transcript_id : XM_001480881.1

name	Bmp7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982486 GeneID:12162 MGI:103302
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bone morphogenetic protein 7 transcript_id : NM_007557.2

name	LOC100043751 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250141 GeneID:100043751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043751 transcript_id : XM_001480886.1

name	Spo11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755623 GeneID:26972 MGI:1349669
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae) transcript_id : NM_012046.1

name	Rae1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803370 GeneID:66679 MGI:1913929
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAE1 RNA export 1 homolog (S. pombe) transcript_id : NM_175112.3

name	Rbm38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053932 GeneID:56190 MGI:1889294
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 38 transcript_id : NM_019547.2

name	Ctcfl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487068 GeneID:664799 MGI:3652571
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCCTC-binding factor (zinc finger protein)-like transcript_id : NM_001081387.1

name	EG619800 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82887848 GeneID:619800 MGI:3648376
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins product : predicted gene, EG619800 transcript_id : XM_884173.1

name	Pck1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130217 GeneID:18534 MGI:97501
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphoenolpyruvate carboxykinase 1, cytosolic transcript_id : NM_011044.2

name	Zbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:11496252 GeneID:58203 MGI:1927449
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Z-DNA binding protein 1 transcript_id : NM_021394.1

name	Tmepai (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119508427 GeneID:65112 MGI:1929600
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane, prostate androgen induced RNA transcript_id : NM_022995.3

name	1700021F07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94367655 GeneID:72221 MGI:1919471
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 2 Proteins product : RIKEN cDNA 1700021F07 gene transcript_id : XM_884453.2

name	1700030G11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94367656 GeneID:70065 MGI:1917315
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 1700030G11 gene transcript_id : XM_130735.7

name	LOC100043911 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250266 GeneID:100043911
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043911 transcript_id : XM_001481221.1

name	Rab22a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343832 GeneID:19334 MGI:105072
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB22A, member RAS oncogene family transcript_id : NM_024436.2

name	1700010B08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250268 GeneID:75485 MGI:1922735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 14 ESTs product : RIKEN cDNA 1700010B08 gene transcript_id : XM_001481222.1

name	Vapb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86476057 GeneID:56491 MGI:1928744
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vesicle-associated membrane protein, associated protein B and C transcript_id : NM_019806.5

name	LOC100043744 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250138 GeneID:100043744
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480918.1

name	Cbln4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28274690 CCDS:CCDS17126.1 GeneID:228942 MGI:2154433
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : cerebellin 4 precursor protein_id : NP_783439.1

name	Mc3r (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678822 CCDS:CCDS17127.1 GeneID:17201 MGI:96929
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : melanocortin 3 receptor protein_id : NP_032587.1

name	2010011I20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541856 CCDS:CCDS17128.1 GeneID:67017 MGI:1914267
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC67017 protein_id : NP_080188.2

name	Aurka (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46358064 CCDS:CCDS17129.1 GeneID:20878 MGI:894678
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0031625 - ubiquitin protein ligase binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0000278 - mitotic cell cycle [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : aurora A; serine/threonine kinase 6 product : serine/threonine protein kinase 6 protein_id : NP_035627.1

name	Cstf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13195628 CCDS:CCDS17130.1 GeneID:67337 MGI:1914587
definition	GO_process : GO:0006397 - mRNA processing [Evidence IEA] codon_start : 1 product : cleavage stimulation factor, 3' pre-RNA, subunit 1 protein_id : NP_077161.1

name	F730031O20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249364 GeneID:320664 MGI:2444482
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2; likely orthologue of H. sapiens chromosome 20 open reading frame 32 (C20orf32) product : HEF-like protein isoform 2 protein_id : NP_001074289.1

name	F730031O20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677627 CCDS:CCDS17131.1 GeneID:320664 MGI:2444482
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1; likely orthologue of H. sapiens chromosome 20 open reading frame 32 (C20orf32) product : HEF-like protein isoform 1 protein_id : NP_001028710.1

name	2410001C21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794468 CCDS:CCDS17132.1 GeneID:66404 MGI:1913654
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : likely orthologue of H. sapiens chromosome 20 open reading frame 43 (C20orf43) product : hypothetical protein LOC66404 protein_id : NP_079818.1

name	A330041C17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88319968 CCDS:CCDS17133.1 GeneID:654821 MGI:3606143
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008375 - acetylglucosaminyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : likely orthologue of H. sapiens chromosome 20 open reading frame 105 (C20orf105) product : hypothetical protein LOC654821 protein_id : NP_001034649.1

name	1700029J11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63492721 GeneID:76426 MGI:1923676
definition	codon_start : 1 product : hypothetical protein LOC76426 protein_id : XP_130728.3

name	LOC629957 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82887393 GeneID:629957
definition	codon_start : 1 product : similar to 40S ribosomal protein S29 protein_id : XP_900017.1

name	Tcfap2c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678253 CCDS:CCDS17135.1 GeneID:21420 MGI:106032
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA] [Evidence IMP] GO_process : GO:0030154 - cell differentiation [Evidence IMP]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation function : transcription factor product : transcription factor AP-2, gamma protein_id : NP_033361.1

name	LOC100043750 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250140 GeneID:100043750
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480931.1

name	Bmp7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982487 CCDS:CCDS17136.1 GeneID:12162 MGI:103302
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0005125 - cytokine activity [Evidence TAS]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007411 - axon guidance [Evidence IDA]; GO:0030509 - BMP signaling pathway [Evidence IDA]; GO:0048754 - branching morphogenesis of a tube [Evidence IDA]; GO:0051216 - cartilage development [Evidence IEA]; GO:0048468 - cell development [Evidence IDA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0048595 - eye morphogenesis (sensu Mammalia) [Evidence IMP]; GO:0040007 - growth [Evidence IEA]; GO:0001822 - kidney development [Evidence IMP]; GO:0001707 - mesoderm formation [Evidence IGI]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IDA]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0001503 - ossification [Evidence IEA]; GO:0007389 - pattern specification [Evidence IMP]; GO:0045597 - positive regulation of cell differentiation [Evidence IDA]; GO:0007435 - salivary gland morphogenesis [Evidence IMP]; GO:0035239 - tube morphogenesis [Evidence IDA] codon_start : 1 note : osteogenic protein 1 product : bone morphogenetic protein 7 protein_id : NP_031583.2

name	LOC100043751 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250142 GeneID:100043751
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480936.1

name	Spo11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755624 CCDS:CCDS17137.1 GeneID:26972 MGI:1349669
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase (ATP-hydrolyzing) activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0006259 - DNA metabolism [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0007131 - meiotic recombination [Evidence IEA]; GO:0001541 - ovarian follicle development [Evidence IMP] codon_start : 1 function : believed to initiate meiotic recombination through formation of a covalent protein-DNA intermediate resulting in a double strand break note : sporulation protein, meiosis-specific, SPO11 homolog (S. cervisiae) product : sporulation protein, meiosis-specific, SPO11 homolog protein_id : NP_036176.1

name	Rae1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28201956 CCDS:CCDS17138.1 GeneID:66679 MGI:1913929
definition	codon_start : 1 product : RAE1 RNA export 1 homolog protein_id : NP_780321.1

name	Rbm38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053933 CCDS:CCDS17139.1 GeneID:56190 MGI:1889294
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 note : seb4 mRNA; RNA-binding region (RNP1, RRM) containing 1; seb4-like product : seb4 protein_id : NP_062420.2

name	Ctcfl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487069 GeneID:664799 MGI:3652571
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : BORIS; likely orthologue of H. sapiens CCCTC-binding factor-like protein (CTCFL) product : CCCTC-binding factor (zinc finger protein)-like protein_id : NP_001074856.1

name	EG619800 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82887849 GeneID:619800 MGI:3648376
definition	codon_start : 1 product : similar to ubiquitin A-52 residue ribosomal protein fusion product 1 protein_id : XP_889266.1

name	Pck1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7110683 CCDS:CCDS17141.1 GeneID:18534 MGI:97501
definition	GO_function : GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004613 - phosphoenolpyruvate carboxykinase (GTP) activity [Evidence IEA]; GO:0004611 - phosphoenolpyruvate carboxykinase activity [Evidence IMP] GO_process : GO:0006094 - gluconeogenesis [Evidence IDA]; GO:0046327 - glycerol biosynthesis from pyruvate [Evidence IMP]; GO:0006629 - lipid metabolism [Evidence IMP] codon_start : 1 product : phosphoenolpyruvate carboxykinase 1, cytosolic protein_id : NP_035174.1

name	Zbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11496253 CCDS:CCDS17142.1 GeneID:58203 MGI:1927449
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003726 - double-stranded RNA adenosine deaminase activity [Evidence IEA]; GO:0003692 - left-handed Z-DNA binding [Evidence IDA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : tumor stroma and activated macrophage protein DLM-1 product : Z-DNA binding protein 1 protein_id : NP_067369.1

name	Tmepai (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119508428 GeneID:65112 MGI:1929600
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS] [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0030521 - androgen receptor signaling pathway [Evidence ISS]; GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : Nedd4 WW binding protein 4 product : transmembrane prostate androgen-induced protein protein_id : NP_075371.2

name	1700021F07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82887863 GeneID:72221 MGI:1919471
definition	codon_start : 1 product : hypothetical protein LOC72221 protein_id : XP_889546.1

name	1700030G11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94367657 GeneID:70065 MGI:1917315
definition	codon_start : 1 product : hypothetical protein LOC70065 protein_id : XP_130735.6

name	LOC100043911 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250267 GeneID:100043911
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481271.1

name	Rab22a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21426817 GeneID:19334 MGI:105072
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : RAB22, member RAS oncogene family product : RAB22A, member RAS oncogene family protein_id : NP_077756.1

name	1700010B08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250269 GeneID:75485 MGI:1922735
definition	codon_start : 1 product : hypothetical protein LOC75485 protein_id : XP_001481272.1

name	Vapb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543940 CCDS:CCDS17146.1 GeneID:56491 MGI:1928744
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : VAMP-associated protein 33b product : vesicle-associated membrane protein, associated protein B and C protein_id : NP_062780.2

name	LOC620189 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620189
definition	number : 4 pseudo : _no_value

name	LOC620189 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620189
definition	number : 3 pseudo : _no_value

name	LOC620189 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620189
definition	number : 2 pseudo : _no_value

clone name	MSMg01-138C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091N15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-094K03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-454H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278J07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-109H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196J23
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-420D17.T7 (MSMg01no420_d17.b1)	MSMg01-420D17.TJ (MSMg01no420_d17.g1)
ACC	AG515146	AG515147
length	895	749
length of high quality (start - end)	---	139 (69 - 207)
definition	CHROMAT_FILE: MSMg01no420_d17.b1 PHD_FILE: MSMg01no420_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:00 2005	CHROMAT_FILE: MSMg01no420_d17.g1 PHD_FILE: MSMg01no420_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:00 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TAAATAACTTACCGCGTTTGGTATTTGATCAATATATTTATAGGTGGCGN GGAGCCGTCATTTACATCATACATCAGACTATTGCACGGCCATAAATTAA TGCACGCGTATCAAAGTAAACTATCACCCGCTAAACGTTGACGCGCTTTC ATAATTGCAGCGTAGAACGTTAAACGTGAGATCGCGGCGCGAGCTGATAT GATAAGAGTTGATATCGCGGCTTAGGTCTCCCCCCCTTTAGTAAACCATA CGGGACACGTGCGCACCTGCGGTGATGGAAATCTTATCGAGACGATANGC CCTGTTGCCTAGCGCCACGGCATTGTATTATTTTATTGGGCGACATCCAT TGCACTTTTGATATTTTGGCCGCTATTGCTGCTCCCGTATAATTTGGCCC CTCCCCCCTTTTCTTCGTTTTCACGCCCGCCCCCTTTTTTTGTTGGCGGC GTGCAGAGCCGTGGAGAGCCCGTGTGGAGCGCCAAAATATAGGGAAACAG TTGAGAGTCACCTATTTTTCGCTTATAGCCTTAATCCTGAAGAGTAACCC TATATTTCTGTGCTTCTGTTTATTGTCACGATGGTGGCCGGATTTATTCA CCCGTTGTCCACTTTATTTTCCGCCCCCGGTTTCCCCGCGGCCCATTTTC CTTACGGCCGTTTTATGCTCTAATTATAACCACCCGCGCTTTTTACCCCG CTTAATTCGGTTTGGTTACAAAAAAACCCGCGGCTACACCATATAGTCAT GGCAAACGTCATAAACAAAATTTGAATCGGATTCGGCGTCCTACTTATAC CCCCGTATCCTATAGTTATTCAACTATAACAGCCCCCAAAACCGTGAATG TAAACACGGTTTATATGCTATCTCTCTCGCGCGCCGTTCTTCTAN	GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXCAGGGCATGCTTTTACAGTCTTGACCCATCTT TGCCACCCAGCCTGAAGAGAGGAGTGATGGCTTCTGGGGAGGGTCGGCAG GCAAGCTGGGACAGCTCCAAGACAGGCAGGCAGTGGGGGTGGGGGTGGGG TGANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNTTTTTTTTTTTNNNNNNNNNNTTTTTTNTNNNTTTNNTTTTTT TTTTTTTTTTTTNNTTTTTTTTTTTTTTTNTTTTTTTTTTTTNNCCCCCC CCCCTCCNTNCCTTTCTTTTCCTTCCCCTTCTCTTTTTCTCTTTTTTTTT CTCTTCTTTCTCCTCCTTTTTTCTTCTCCTCCCCTTTTTCTTTCCTCCTT TTCTTTCTCTTTTCTTTCTCTTTTTCTTTTCCTTTTTCCTTTTCTTTTTT CCCTCTTCCTTTCTCCCTCTCTTTTTTTTTTTTTTTTCCCTCCTTTCCTC TTTTTTTTTTTTTTCCCCTCTTTTTTTTCTCCCTTTTCTTCTTCTTTTTT TTTTTTCCCTTTTTTTTCTCTCTTTTTTTTTTCCTTTTTCCCTTTTTTTC TTCCTTTTTTTTTCCTTTCTCTCTTTTCTCCTCTTTTTTTCTCTCCTTC
quality values	Open. Hide. 8 8 8 8 8 11 8 8 8 8 8 8 8 8 8 6 6 6 8 9 9 9 15 15 17 13 18 10 10 10 9 10 9 6 6 6 6 8 8 8 8 8 8 8 7 6 8 8 3 0 3 8 6 6 8 8 10 10 8 8 8 8 8 8 8 8 6 8 8 6 6 6 6 11 11 8 8 8 8 8 10 8 8 8 10 8 8 10 8 6 6 6 6 8 8 10 10 8 9 9 9 9 9 11 6 8 6 6 8 10 11 11 11 10 10 10 10 10 10 8 8 8 8 8 11 19 12 11 11 8 8 8 8 8 8 8 8 8 10 9 9 9 13 7 7 6 6 6 8 10 10 8 8 8 8 8 8 6 8 8 8 8 8 8 8 8 8 8 6 8 6 6 8 10 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 9 9 9 9 9 10 10 13 10 9 9 9 10 9 9 9 6 6 6 6 8 10 8 6 8 6 6 8 8 10 13 10 10 9 8 8 8 8 8 8 10 10 11 11 9 6 6 6 6 6 6 8 8 11 8 6 6 6 12 6 8 8 8 8 8 6 7 6 6 8 10 10 8 8 8 8 8 8 8 8 8 8 10 8 10 10 10 10 12 15 10 8 8 8 8 8 9 9 9 6 8 6 6 8 6 3 0 3 11 8 8 8 8 8 11 11 9 9 9 8 8 6 6 8 8 8 8 8 8 8 9 11 10 10 10 8 8 6 6 8 8 8 6 6 6 8 15 10 10 8 8 8 8 8 8 6 6 6 6 8 8 8 8 6 8 8 8 6 6 8 8 10 9 9 9 9 10 9 8 8 8 8 8 8 8 8 6 8 6 6 8 8 10 9 6 6 6 6 6 8 8 8 8 8 9 11 14 15 12 12 12 11 11 11 10 11 11 10 10 13 11 9 9 9 12 9 9 12 9 9 9 9 9 9 8 10 8 8 8 10 10 8 8 8 8 14 22 13 9 9 7 7 6 9 9 9 7 8 8 8 8 8 8 12 10 10 8 8 8 8 8 8 11 12 9 9 9 6 6 7 6 8 8 8 8 7 6 8 8 8 8 8 8 8 9 8 8 8 8 9 8 8 8 8 6 6 7 8 8 8 9 9 9 9 10 10 8 8 7 10 10 11 11 11 16 13 10 8 8 6 6 8 6 6 6 6 6 8 8 15 9 6 8 6 6 8 8 9 9 7 8 6 6 6 8 8 8 11 11 8 8 6 6 8 8 11 10 10 8 8 8 8 13 11 11 10 11 10 14 10 8 8 8 8 8 8 8 8 7 9 9 9 9 11 11 11 11 12 8 8 6 6 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 7 7 7 7 10 13 12 13 13 19 18 13 8 6 6 8 8 8 10 8 8 8 8 15 13 10 10 8 6 6 6 8 6 10 8 8 8 10 8 9 9 9 8 8 8 8 6 6 8 8 8 10 11 9 8 8 6 6 8 8 10 10 8 10 8 8 8 8 6 6 8 8 8 10 11 10 8 6 6 6 6 10 7 10 8 8 8 8 8 10 8 6 6 6 6 9 9 8 8 6 6 8 8 8 8 8 8 8 8 8 8 17 10 14 15 14 11 10 9 10 10 10 8 8 8 8 8 6 6 6 7 8 8 8 8 6 6 6 6 8 6 6 8 8 8 8 8 8 9 8 15 8 8 8 8 8 8 10 11 14 21 24 12 12 13 10 8 8 8 8 8 8 8 8 8 10 10 9 9 9 9 9 10 8 6 6 8 8 8 8 8 8 13 15 19 14 8 8 6 6 8 8 8 8 6 6 6 6 10 10 8 8 9 10 11 11 11 11 8 8 8 6 6 6 8 8 10 12 12 11 11 9 10 9 8 8 8 9 8 8 8 8 13 8 8 7 6 6 8 10 8 11 8 8 6 6 8 6 6 8 8 8 8 8 8 11 9 9 10 8 8 8 8 8 6 6 6 6 8 6 7 8 8 8 8 3 0	Open. Hide. 6 6 6 6 6 6 13 18 34 39 39 39 39 39 39 39 39 39 41 37 21 22 11 6 6 6 6 6 8 21 10 13 13 29 23 39 48 50 53 39 36 33 33 33 36 33 48 41 40 41 27 19 9 9 9 9 9 13 17 28 28 34 32 33 33 33 36 36 36 36 36 36 47 47 47 47 57 59 59 59 59 47 42 40 40 40 42 57 59 53 53 50 50 50 50 50 68 68 68 68 68 51 51 50 50 50 50 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 50 50 50 50 50 50 57 57 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 57 50 50 47 50 47 54 57 57 57 57 54 54 68 68 68 68 57 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 53 50 50 59 59 59 59 59 59 27 27 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 7 9 9 23 23 24 13 13 3 0 0 0 0 0 0 0 0 0 0 3 10 9 8 8 3 0 3 0 0 0 3 10 3 0 0 3 12 8 10 15 12 10 10 8 8 7 7 9 13 11 11 9 3 0 0 3 9 9 9 11 11 9 11 11 8 8 8 10 11 3 0 3 8 7 7 7 8 13 9 9 9 12 3 0 0 3 7 7 11 23 15 15 13 10 10 11 12 3 0 3 0 3 9 10 13 10 10 8 10 10 13 13 14 10 10 12 12 7 7 8 6 7 8 8 8 10 12 14 15 10 8 8 9 9 7 9 8 10 8 8 8 10 8 8 8 8 6 6 8 8 8 8 8 6 6 6 8 10 11 11 10 8 8 10 10 8 8 8 10 10 13 10 10 8 8 8 10 8 10 8 8 8 8 8 8 10 12 14 14 17 13 17 14 13 13 11 12 15 11 11 9 11 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 15 15 15 8 8 9 10 15 14 16 9 8 8 8 7 8 6 6 8 8 10 9 10 11 12 11 10 10 15 15 8 8 8 12 8 8 22 16 18 8 8 6 6 6 6 6 15 15 13 13 19 19 12 11 11 11 11 14 16 12 10 10 9 11 10 10 10 9 12 11 11 17 15 11 10 10 15 16 20 20 22 23 17 10 11 10 13 8 8 8 8 8 10 8 8 8 8 10 8 8 8 6 8 6 6 8 8 11 13 12 10 10 8 7 6 8 8 15 11 12 15 18 10 10 12 25 27 17 11 10 9 9 9 10 13 13 15 11 10 14 14 17 18 16 16 10 11 19 15 14 11 11 18 22 19 10 10 10 10 8 8 8 8 8 8 9 8 17 22 11 10 7 7 6 6 8 8 8 9 12 16 15 14 12 11 10 12 14 10 10 10 12 13 15 8 8 8 9 12 14 10 10 10 10 10 9 11 11 19 17 16 17 16 13 13 7 7 6 11 11 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no420_d17.g1 MSMg01no420_d17.g1 CHROMAT_FILE:
MSMg01no420_d17.g1 PHD_FILE: MSMg01no420_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:00 2005
         (139 letters)



>mm_chr2_172658493_172659031
          Length = 539

 Score =  261 bits (135), Expect = 1e-74
 Identities = 135/135 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggcatgcttttacagtcttgacccatctttgccacccagcctgaagagaggagtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cagggcatgcttttacagtcttgacccatctttgccacccagcctgaagagaggagtgat 276

                                                                       
Query: 61  ggcttctggggagggtcggcaggcaagctgggacagctccaagacaggcaggcagtgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcttctggggagggtcggcaggcaagctgggacagctccaagacaggcaggcagtgggg 216

                          
Query: 121 gtgggggtggggtga 135
           |||||||||||||||
Sbjct: 215 gtgggggtggggtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information