BAC Information

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BAC

Clone NameMSMg01-420G18
Chromosome2 (Build37)
Map Location 141,641,924 - 141,642,573
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420G18.T7 (MSMg01no420_g18.b1)MSMg01-420G18.TJ (MSMg01no420_g18.g1)
ACCAG515291AG515292
length718748
length of high quality
(start - end)
---651 (62 - 712)
definitionCHROMAT_FILE: MSMg01no420_g18.b1 PHD_FILE: MSMg01no420_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:15 2005CHROMAT_FILE: MSMg01no420_g18.g1 PHD_FILE: MSMg01no420_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCACTCATATTTGCCGCCGNAAGAAGACTACTTCTTCAAAGGCACGGAG
GAATNNTGTTCCTTCCACGACTACTCNGGAGGACATCAATAGCACCCGGC
GATGGCGGCCGTTGATTATCTGCAGGAGTTGTCAGAAGAATCAGCTGGCA
ACTTTATTTACCTGCTGGACGCCCCTCAACTCATCTCCTCCCACAAAAAA
AAGAAAGCGGCGGCTGTGGACCACAAAGCTGCTGCCCCCCCCTGTGACTG
CTGGTGGGCCCGACTGATGAGCAGTAATCTTCTGTCTGAGTCCTCTTGAG
GTGGCACACGTTTCTCTCCTCTCCACAANAGTTGGGGCTTTTAAGAAGTA
ATCTTTTCTTTACTATTCCACGCCATCCTACTCTTCTGGTTGGCAGCTTC
CAGGATAATACCCTATTAGGAAAAAAAAAAAAGAAGAAAACAAAGGCTGC
TTTCCATTTCGATGGGGATATTTTTACTTCTCCCCTTCCTGGAAAGAATA
AAGAGCCTCTCACATCATTGGCAGGAGGGAGGACAATAAAAAGCCTGAAG
TTGCCATGTTTTTGTGAGGAATGCCATTCCATTTGTCTAGCACAGAGGTT
TTATTCCTCTTAGAGCCAAGTCCTTCATGTTTGATACATACCCAGGTGGC
ATAAAAAAATGTATGGCGTGTTCCCAGGGAACTCCGCACAGCGTGCGCTT
TAACTCAAGTGACATTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCTAAGGGAGCATGCATTTTGTAGCATGCAGAGGACTTG
TTAACTCCTCAAGAAAATCTTCCTAGGAGATAAGGCATAAACGATATAGT
CTGAGATAGACCACTAGCTTTGCCGGGGAACTCATACATGGACATCTTGG
AGTTCTAATCAGGTCTCAATTGCAGAGTGGAGAGGGAAACTGAACCTCCA
TCAACTATAAAGCAGCAGAGAGGCAAATGCTTAGCAGTCTAGAAAGCTCT
TGTTAAAGCCATGGTCGTGTGCAATCTTCTGGCTAGGAAGCCGTGCTTCA
CCTGAGGCCAACCATCTGTTCATATATGCAGACTGTGGGATATGGAACCT
TTCTTTAACTACTCCATGGAGATTTCTTTTGATGTTCTTCCTCATAATGC
TACCTCTCCCCCTGCAAACCAAGACCCTATTCTGGACTGAAGGAGTCACT
GGAGGAATCCTTTGCTTTACTTAGTGGGTACCTTGAAGCTGAAGCTGAAG
CTGAAGCTGAATGACACAGAAGACACTCCACTGTGTCTTTTCAAACTCAA
AGTTGGTTTTCCTCTGTGCTGAAGGAAGGTAGAAGCTTTGTTGCATCACG
TACACATTTTGGAGGCTCTGCCAGACNAGTATTTTTTAACTATGTATCTT
ACACAAACAGAATGTTATTGAAAATGTTAAGTACCATCTCTATGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_g18.g1 MSMg01no420_g18.g1 CHROMAT_FILE:
MSMg01no420_g18.g1 PHD_FILE: MSMg01no420_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:16 2005
         (651 letters)



>mm_chr2_141641724_141642774
          Length = 1051

 Score = 1189 bits (615), Expect = 0.0
 Identities = 641/650 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaagggagcatgcattttgtagcatgcagaggacttgttaactcctcaagaaaatctt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 cctaagggagcatgcattttgtagcatgtagaggacttgttaactcctcaagaaaatctt 260

                                                                       
Query: 61  cctaggagataaggcataaacgatatagtctgagatagaccactagctttgccggggaac 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 cctaggagataaggcatgaacgatatagtctgagatagaccactagctttgccggagaac 320

                                                                       
Query: 121 tcatacatggacatcttggagttctaatcaggtctcaattgcagagtggagagggaaact 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tcatacatggacatcttggagttctaatcaggtctcaattgcacagtggagagggaaact 380

                                                                       
Query: 181 gaacctccatcaactataaagcagcagagaggcaaatgcttagcagtctagaaagctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacctccatcaactataaagcagcagagaggcaaatgcttagcagtctagaaagctctt 440

                                                                       
Query: 241 gttaaagccatggtcgtgtgcaatcttctggctaggaagccgtgcttcacctgaggccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaaagccatggtcgtgtgcaatcttctggctaggaagccgtgcttcacctgaggccaa 500

                                                                       
Query: 301 ccatctgttcatatatgcagactgtgggatatggaacctttctttaactactccatggag 360
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 501 ccatctgttcatatatgcagactgtggggtgtggaacctttctttaactactccatggag 560

                                                                       
Query: 361 atttcttttgatgttcttcctcataatgctacctctccccctgcaaaccaagaccctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttcttttgatgttcttcctcataatgctacctctccccctgcaaaccaagaccctatt 620

                                                                       
Query: 421 ctggactgaaggagtcactggaggaatcctttgctttacttagtgggtaccttgaagctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggactgaaggagtcactggaggaatcctttgctttacttagtgggtaccttgaagctg 680

                                                                       
Query: 481 aagctgaagctgaagctgaatgacacagaagacactccactgtgtcttttcaaactcaaa 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 681 aagctgaagctgaagctgaatgacacagaagacactccactctgtcttttcaaactcgaa 740

                                                                       
Query: 541 gttggttttcctctgtgctgaaggaaggtagaagctttgttgcatcacgtacacattttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttggttttcctctgtgctgaaggaaggtagaagctttgttgcatcacgtacacattttg 800

                                                             
Query: 601 gaggctctgccagacnagtattttttaactatgtatcttacacaaacaga 650
           ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 801 gaggctctgccagacaagtattttttaactatgtatcttacacaaacaga 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)