BAC Information

Click to search

BAC

Clone NameMSMg01-420G20
Chromosome2 (Build37)
Map Location 123,880,122 - 123,880,395
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367, LOC100043369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420G20.T7 (MSMg01no420_g20.b1)MSMg01-420G20.TJ (MSMg01no420_g20.g1)
ACCAG515295AG515296
length757749
length of high quality
(start - end)
274 (274 - 547)642 (62 - 703)
definitionCHROMAT_FILE: MSMg01no420_g20.b1 PHD_FILE: MSMg01no420_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:16 2005CHROMAT_FILE: MSMg01no420_g20.g1 PHD_FILE: MSMg01no420_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCAATAATTGGGGCGGCGAAAGAANCCCACAGTCGTAGATCCGCGGGAA
NNNGANATTTACGTCAACATATTCGGANGGGGATGGTGACTAAACCCCAA
GTGGTGTAAATATCCCACCATATATATGTGTGTGCCATATAACATAGTGC
ACGAGACTATAGGATTTTTAGTGCCCACTCTTTACACAAGTGTTTCCCAT
ATTAAAAATCACCCCCAAACCTAAATTAATAGGCTACAAATGGTTTTCCA
TTTAAAACGGTTATTTAGCAACCACTACTAATACACTGAAAAGAAAGAAT
GATTACAGAATTTATAATTACCTTAGTCCATTGCCTAAACCACACTGTGA
GTGAACTTTGCAGTTTTATTGAAAAATAGGCCACCACTTTGTTAGTGCAA
CACAATTTCTTACTACAGTTCTAAATATTAAAGATCTATTTAAACGTAGT
GACCATCTCTTATCAAAGAAGCTTCTCTTTACAGCAAATGGAGGCCATCA
CAGAAAAGCAAACCCAGATAAAATGCGGAGATCGATTGATCTTGAGGAGT
CCAGTCCCAACAGATACATCTATATGTTATGCCCTGCATCCCTCACGAAG
ATGGGACAGAAAGATTGTGAGAGCAGTCTGCAATAAAAGAGTCTCTTCTT
ATATGGGTACCTGACCAAGACTGAACATTAGCACCCCCCTGGGCAAGGTA
CTTGTAAAAAGGAAAATTCCCCAAGGGCTATCCCTAAATAAAACCCTAAG
CACTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGA
TCTTGTCAAATGCTTTTTCTGCATCTAAGGAGATGATCATGTGGTTTTTG
TCTTTGAGTTTGTTTATATAATGGATTACGTTGATGGATTTCCATATATT
AAACCATCCCTGCATCCCTGGAATAATACCTACTTGGTCAGGATGGATGA
TTGCTTTAATGTGTTCTTGGATTCGGTTAGCAAGAATTTTTTGGAGGATT
TTTGCATCTATATTTATAAGGGAAAATGGTCTGAAGTACTCTATCTTTGT
TGGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATG
AGTTGGGTAGAGTTCCATCTACTTCTATTTTGTGGAATAGTTTATGCAGA
ACTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCC
ATCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATGACTGCTTCTA
TTCCTTTAGGGGATATGGGACTGTTTAGATCGTTAACTTGATCCTGATTT
AACTTTGGTACCTGGTATCTGTCTAGAAATTTGTCCATTTCATCCATGTT
TTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTT
GGATTTCTCCAGGATCTGTTGTTATGTCTCCCTTTTCATTTCTGATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_g20.b1 MSMg01no420_g20.b1 CHROMAT_FILE:
MSMg01no420_g20.b1 PHD_FILE: MSMg01no420_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:16 2005
         (274 letters)



>mm_chr2_123880089_123880762
          Length = 674

 Score =  491 bits (254), Expect = e-143
 Identities = 269/274 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actactaatacactgaaaagaaagaatgattacagaatttataattaccttagtccattg 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||
Sbjct: 307 actactaatacactgaaaagaaagaatgattacagaatttataatgaccaaagtccattg 248

                                                                       
Query: 61  cctaaaccacactgtgagtgaactttgcagttttattgaaaaataggccaccactttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cctaaaccacactgtgagtgaactttgcagttttattgaaaaataggccaccactttgtt 188

                                                                       
Query: 121 agtgcaacacaatttcttactacagttctaaatattaaagatctatttaaacgtagtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agtgcaacacaatttcttactacagttctaaatattaaagatctatttaaacgtagtgac 128

                                                                       
Query: 181 catctcttatcaaagaagcttctctttacagcaaatggaggccatcacagaaaagcaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 catctcttatcaaagaagcttctctttacagcaaatggaggccatcacagaaaagcaaac 68

                                             
Query: 241 ccagataaaatgcggagatcgattgatcttgagg 274
           ||||||||||||| ||||||| ||||||||||||
Sbjct: 67  ccagataaaatgcagagatcggttgatcttgagg 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)