BAC Information

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BAC

Clone NameMSMg01-420H22
Chromosome2 (Build37)
Map Location 134,597,043 - 134,597,239
singlet/doubletsinglet
Overlap genenone
Upstream geneHao1, Txndc13, LOC627897, LOC433478
Downstream genePlcb1, LOC100043487, LOC100043786, LOC100043788, Plcb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420H22.T7 (MSMg01no420_h22.b1)MSMg01-420H22.TJ (MSMg01no420_h22.g1)
ACCAG515347AG515348
length754767
length of high quality
(start - end)
---197 (295 - 491)
definitionCHROMAT_FILE: MSMg01no420_h22.b1 PHD_FILE: MSMg01no420_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:22 2005CHROMAT_FILE: MSMg01no420_h22.g1 PHD_FILE: MSMg01no420_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAACAATAAGTTGGCGCCGNTAAGAAGAATATAAGTACGGGATGAGAGG
GGANGGAAACGAGTCTATTCAAAGAGAAGAGAAGGNAGNNAGACGGGANG
GAAGGAGACAGAAGGCAAAATTCTTTCTAAACACAAGTAGGGACGGTACT
ACTTATACCTGCCGCGGGTGGAAGAATAAATAGAGCTGCGAAAAGGACTC
ACCCAAACAAGACAAGATGGTGATTACAGATGAGAGAGAAAGAAATCACG
CAGGAGAGAGGAGACGGTAGATAGAATACACACGCAGGCATACATACACA
ACGAAGGTAGGAATGACGGTAGGAAAAAGAAAGTACATACTTTTTTTTTT
TCAACCCAGGAGAGGCCTGACCATTCAGAGAGCTGAATGTTTGCAAAACA
AAGTCGCGCTCGGGCCCAAAAAGCAGCCCGTGCATATATATACCCCGGTG
GAAGCGCCATGAGAAAGCAAGGACCGCCATTACAAACACCCCCCCGAAGC
AGCGTACAGAATAACAACTAGGTGCTTAGCTCGAAAATCTCCAAGAGGTG
CTCACCGTACCCCCCCCGAAAAGCTGCTTAAGAGACTAGAAGAACTCTCC
TCTGAGAAGATACAGACACCCGGCAGAGAGGAAAGACCGAATATCGGCTC
CCGAACACAAATTACGAGAGAAGGCCGTTTTTCTGGGTTGCCTGAAGGCG
TCCCAATAGTTGGGGGACCTGTCGCTGACCCCTCTTGGTACTATTTCAGA
ACTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTTCCTTCTATGGCATAATTTGTAGATACCATCTT
TTCTAAATGTGTGACATGTATCCCACAAATCTCTTATATTCTGATCATAT
ATTTTACAAAGAAATGTCGTTGATTTTCAGTGAATTACCTAGATCCTCTA
CCATACTCTTGATCCCTGCTATCCGCATGACCCATTCTATTTGCAAGACT
TTCCATGGAGTTTCTTATTTGGTGCGATAAAATTTTCATTTCTGATATCT
TTTGAATTCAAAACTTATTTCTATATGCTAAATTCTATTTTCATATCTTA
CACTGAGATCTTTATTTCACTGAGCTTTAAAAATTACCCTGGAAATTATT
CATATCCTCTTAGAATTTATTCATAAATTTGTCTATGCCTACTTTGAGAT
CTTTGAGCATATTTACACTTTTTCTTTGCATTCTTTGTCTGGGATTTCAC
ATAAGTCACTGAGCAAGTTGTGATAAGTGCTCATATTTTTAAAAATATGA
GAAATATCACATANAATCCTAATTATGTGCCTCAAAGCTCTCAATGTACA
AAAACAAATTCCCCATTTTCGAGATAGTAAATAGTAGAAAATTATTAAAT
TGTAATTTGAAGAACAATACCGAAAACCAAAGGCCTTTCTTTTTAAAAAG
TAAAAAAAATGTCCACCCCTTGTCTATTTTTTTAAAAAAAGAAAGGAACC
TCCGGTTTCTAAGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_h22.g1 MSMg01no420_h22.g1 CHROMAT_FILE:
MSMg01no420_h22.g1 PHD_FILE: MSMg01no420_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:22 2005
         (197 letters)



>mm_chr2_134596843_134597439
          Length = 597

 Score =  366 bits (189), Expect = e-106
 Identities = 195/197 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcttttgaattcaaaacttatttctatatgctaaattctattttcatatcttacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatcttttgaattcaaaacttatttctatatgctaaattctattttcatatcttacact 260

                                                                       
Query: 61  gagatctttatttcactgagctttaaaaattaccctggaaattattcatatcctcttaga 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gagatctttatttcactgagctttaaaaattactctggaaattattcatatcctcttaga 320

                                                                       
Query: 121 atttattcataaatttgtctatgcctactttgagatctttgagcatatttacactttttc 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 atttattcataaatttgtctatgcctactctgagatctttgagcatatttacactttttc 380

                            
Query: 181 tttgcattctttgtctg 197
           |||||||||||||||||
Sbjct: 381 tttgcattctttgtctg 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)