Query= MSMg01no420_i09.b1 MSMg01no420_i09.b1 CHROMAT_FILE:
MSMg01no420_i09.b1 PHD_FILE: MSMg01no420_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:24 2005
(539 letters)
>mm_chr2_24030850_24031788
Length = 939
Score = 982 bits (508), Expect = 0.0
Identities = 532/540 (98%), Gaps = 2/540 (0%)
Strand = Plus / Plus
Query: 1 cagttcaaattagtactttctattgctttagctttccagttgcacataattgcacaacaa 60
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttcaaattagtgcttcctattgctttagctttccagttgcacataattgcacaacaa 260
Query: 61 ttcatagcttctgtaaattatgagaaacatcttcaaggtggccctacatggcttcattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatagcttctgtaaattatgagaaacatcttcaaggtggccctacatggcttcattct 320
Query: 121 tttataataattcatttaatgatcctatttatttctgctgttttattgagtagtgtaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttataataattcatttaatgatcctatttatttctgctgttttattgagtagtgtaggg 380
Query: 181 cttattttctgaaatttgttct-ctctttcatacaagggaggataaagttaaatagtttg 239
|||||||||||||||| || || | |||||||||||||||||||||||||||||||||||
Sbjct: 381 cttattttctgaaatt-gtccttcactttcatacaagggaggataaagttaaatagtttg 439
Query: 240 ttggttcatattatagaatgtgggtttcatcgagaccagctttgggagaatgtgatgaaa 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 ttggttcatattatagaatgtgggtttcatcgagaccagctttgggagaatgtggtgaaa 499
Query: 300 gcaagtcttaggccctaagcctttaaacctgtctatattactattctatctagggaagct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcaagtcttaggccctaagcctttaaacctgtctatattactattctatctagggaagct 559
Query: 360 acaccagaagctgccccaaagaattaccatggcatttcctcaagtctgttaaagcataga 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 acaccagaagctgccccaaagaattaccatggcatttcctcaagtctattaaagcataga 619
Query: 420 tgaacccatgttggtttctgtgattcattgtatactcctgattccctatgaaagatatat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgaacccatgttggtttctgtgattcattgtatactcctgattccctatgaaagatatat 679
Query: 480 gccagtttctttccagtggcatcccctgacccagaatgctacccatgtttatagatcgtt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gccagtttctttccagtggcatcccctgacccagaatgctacccatgtttatagatcgtt 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no420_i09.g1 MSMg01no420_i09.g1 CHROMAT_FILE:
MSMg01no420_i09.g1 PHD_FILE: MSMg01no420_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:24 2005
(332 letters)
>mm_chr2_24176336_24177070
Length = 735
Score = 609 bits (315), Expect = e-179
Identities = 329/335 (98%), Gaps = 3/335 (0%)
Strand = Plus / Minus
Query: 1 gttaaaatctctcaatggttatgtttattgctaagatccttgtgcctgcagctttcaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gttaaaatctctcaatggttatgtttattgctaagatccttgtgcctgcagctttcaccc 476
Query: 61 acatgaatatttctcactccttttctcaagtagttctctctatgtcaataaggtatgcct 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 acatggatatttctcactccttttctcaagtagttctctctatgtcaataaggtatgcct 416
Query: 121 cttcttgcaaggccacactcatgattgtggatgtgcttttattcttttcctgagtgtctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cttcttgcaaggccacactcatgattgtggatgtgcttttattcttttcctgagtgtctt 356
Query: 181 tctttctgctcctagtaagatcccaactctgcttcactttgactcactgtgaacacttc- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tctttctgctcctagtaagatcccaactctgcttcactttgactcactgtgaacacttca 296
Query: 240 --aaaaaaaaaaaggaaaaaaggatatgtcacattcaattattgttaatggcagccttct 297
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 295 aaaaaaaaaaaaaggaaaaaaggatatgtcacattcaattattgttaacggcagccttct 236
Query: 298 aatacaaggtctttgttaagcaaataaaaagtgtt 332
|||||||||||||||||||| ||||||||||||||
Sbjct: 235 aatacaaggtctttgttaagtaaataaaaagtgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 735
Length adjustment: 9
Effective length of query: 323
Effective length of database: 726
Effective search space: 234498
Effective search space used: 234498
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
