BAC Information

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BAC

Clone NameMSMg01-420I16
Chromosome2 (Build37)
Map Location 56,052,506 - 56,052,907
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666936, Kcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420I16.T7 (MSMg01no420_i16.b1)MSMg01-420I16.TJ (MSMg01no420_i16.g1)
ACCAG515383AG515384
length734746
length of high quality
(start - end)
31 (414 - 444)401 (320 - 720)
definitionCHROMAT_FILE: MSMg01no420_i16.b1 PHD_FILE: MSMg01no420_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:25 2005CHROMAT_FILE: MSMg01no420_i16.g1 PHD_FILE: MSMg01no420_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAAAATTTGTGCCGCGAAAAGAGACCCAAAGTGCANAGAGGAGCGGA
ANTCNCNTGTCTACCAAACAAACCACGAGAACTATGAAGATGTATCCTCC
ACAACACTTTGTTGTTTTCTTCGCGAGAATGATGTGAGACTACTGCTGTA
GTATACTTTCCCCATGAAGAAGACGTGCTCAGCTTCTTCACCACAAACCG
CGCCCACTCCTCACACTCCCCCCCCACACTACAAATAATAGGGGGCAGAT
ATTTTGTATACTTCTTTCATCTCCAGAAAATGCTACTCAAAATGACACAC
AAAACACTTACGTGGAATTTTTTTTTAATCTCCTCACTCTTAATATGAGC
AGATAAAATCATACATATTTCGGTGTCTGTGACACAAAACAGTAATCTCT
CTATGAGGTAAAGAAAAAAAGTGATGTGTAGAGAAAAATAAAAAGACTCA
CATGCGATAGTGAAATTTTTATATTTGAATATGGAATATTTTTAACAATA
TCCTAAAAATTATTTTTAAAATATATGTGAATAAAATTTGACAATTCCTA
ATTAAAAAAAAACCTAATTCTAGCCAGGAAAAACCAAAACTTAGTTCATC
TACCAACTTTATTCATGATTATTTTAAATTGTACCCATTCTATTTATAAT
CCATGTGGTGCCCTTGACTTTTAATTATGCCAAGCCTAAGTCTACTTTTT
TTTTTTTTTACTAGTTGATCATTGCCTAAATCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACTAATGTAATAAAGTCTTCTGTGAGGAAACAGGTA
AAAGGGTATTAAAATAAACCCATAATAGTTCAGAGATGTAGAAACTGGGT
CACTTTCCAGAGAGACATGAAAATATCTTTGAAATGGTCCACTTGGTTCT
ATAAAATTATATTTATATATTTGTATTTATTTATGCACTCGAGTTTATAG
ATGTAAGTATCTGCATGCTACAGTGGCACTTATAGAGGCCAGAGGACACA
TTGCCAGACAGTTCTTTTCTTCCACTCTATAAGATTCAAGGATGGAGCTC
AGGTTGTCAGGCTTGGTGACCAAACTGATGATCCAACTTCAAGGCTGAAA
AGTCCATGGTTGTGCTAAATTCATTTTGTGTATTTTATTTCAAGAAAATA
GCATTTCCTGTGAGAATTGGTACTTATTAATATTTGAGATAGTTTGATCT
AAATGTAGAGTCCATAATGCAGCAAGGCACAGAGAGAAAATAAAAGACAT
GTATTAACCAGTTGAAGTATAGATCTGGAATGTGAAGGGAGATTTGCGAT
TTGAAAAGACAAGATATACCTTGAGTGTTCACTGCTTACTGAGTCAGACA
ACACTAAACTTGGTTGTAGAGAGTCATTACTGTTGAAAATTCTGTGGGTC
ACACTACCTCTGTCCCAAGTGTTTATTTGTTGGTTATATATCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_i16.g1 MSMg01no420_i16.g1 CHROMAT_FILE:
MSMg01no420_i16.g1 PHD_FILE: MSMg01no420_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:25 2005
         (401 letters)



>mm_chr2_56052255_56053056
          Length = 802

 Score =  762 bits (394), Expect = 0.0
 Identities = 400/402 (99%), Gaps = 1/402 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccactctataagattcaaggatggagctcaggttgtcaggcttggtgaccaaactgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttccactctataagattcaaggatggagctcaggttgtcaggcttggtgaccaaactgat 594

                                                                       
Query: 61  gatccaacttcaaggctgaaaagtccatggttgtgctaaattcattttgtgtattttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gatccaacttcaaggctgaaaagtccatggttgtgctaaattcattttgtgtattttatt 534

                                                                       
Query: 121 tcaagaaaatagcatttcc-tgtgagaattggtacttattaatatttgagatagtttgat 179
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tcaagaaaatagcatttccttttgagaattggtacttattaatatttgagatagtttgat 474

                                                                       
Query: 180 ctaaatgtagagtccataatgcagcaaggcacagagagaaaataaaagacatgtattaac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctaaatgtagagtccataatgcagcaaggcacagagagaaaataaaagacatgtattaac 414

                                                                       
Query: 240 cagttgaagtatagatctggaatgtgaagggagatttgcgatttgaaaagacaagatata 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cagttgaagtatagatctggaatgtgaagggagatttgcgatttgaaaagacaagatata 354

                                                                       
Query: 300 ccttgagtgttcactgcttactgagtcagacaacactaaacttggttgtagagagtcatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ccttgagtgttcactgcttactgagtcagacaacactaaacttggttgtagagagtcatt 294

                                                     
Query: 360 actgttgaaaattctgtgggtcacactacctctgtcccaagt 401
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 actgttgaaaattctgtgggtcacactacctctgtcccaagt 252


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 802
Length adjustment: 9
Effective length of query: 392
Effective length of database: 793
Effective search space:   310856
Effective search space used:   310856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)