Query= MSMg01no420_l20.b1 MSMg01no420_l20.b1 CHROMAT_FILE:
MSMg01no420_l20.b1 PHD_FILE: MSMg01no420_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:41 2005
(197 letters)
>mm_chr2_133575033_133575629
Length = 597
Score = 358 bits (185), Expect = e-103
Identities = 196/201 (97%), Gaps = 4/201 (1%)
Strand = Plus / Minus
Query: 1 tcccttaatatggagagggagagagagaaagagagagagagggaga---a-agagaggga 56
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 471 tcccttaatatggagagggagagagagaaagagagagagagggagagagagagagaggga 412
Query: 57 aagagagagagagaactgatatttatctttcagtcagctcttcatatttattggataaca 116
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 411 aagagagagagagaactgatatttatctttcagtcagctcttcatatttattgcataaca 352
Query: 117 ctcccttcacatctaatcagaaaggcaatctttcttctaataaggtaaatataattactt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ctcccttcacatctaatcagaaaggcaatctttcttctaataaggtaaatataattactt 292
Query: 177 acaaaatattacagctggttg 197
|||||||||||||||||||||
Sbjct: 291 acaaaatattacagctggttg 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space: 111321
Effective search space used: 111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no420_l20.g1 MSMg01no420_l20.g1 CHROMAT_FILE:
MSMg01no420_l20.g1 PHD_FILE: MSMg01no420_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:41 2005
(478 letters)
>mm_chr2_133432179_133433056
Length = 878
Score = 855 bits (442), Expect = 0.0
Identities = 469/478 (98%)
Strand = Plus / Plus
Query: 1 tttagatgtggcattctgagtggcttttctccagtttataattaagctatgatttaactc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tttagatgtggcattctgagtggcttttctccagtttatatttaagctatgatttaactc 260
Query: 61 tcccaaagttaaaaaactcaacctgttcagaatgtatattaatggtacctgtgaacaaat 120
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tcccaaagttaagaaactcaacctgttcagaatgaatattaatggtacctgtgaacaaat 320
Query: 121 tgagctgagagtggcagattggaatggagaatcactatcttttaaaagtagaacagagat 180
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tgagctgagggtggcagattggaatggagaatcactatctttttaaagtagaacagagat 380
Query: 181 ttacaggagggcttgaatataagagtaaggagaatttgccacagctcttcctgcctcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacaggagggcttgaatataagagtaaggagaatttgccacagctcttcctgcctcata 440
Query: 241 ggaagtctaccctaaccccagactcacaagtgagatgcctccccagcagccccaataacc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagtctaccctaaccccagactcacaagtgagatgcctccccagcagccccaataaca 500
Query: 301 cttgcctgctgggaccagcagacaataagcccagtagccttagtctcttccctgccctgt 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 cttgcctgctgggaccagcagacaataagcccagtagccttggtctcttccctgccctgt 560
Query: 361 tggagccccatcctccttttgtccaacacctacaccttcagtctcagaagggcactctgc 420
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 561 tggagccccatcctccttttgtccaatacctacaccttcagtctcagaagggcactgtgc 620
Query: 421 atgtctgcttgcctcctgggagtgctgctaaaacctgggacaccaaggctaggtacca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtctgcttgcctcctgggagtgctgctaaaacctgggacaccaaggctaggtacca 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
