Query= MSMg01no421_a17.b1 MSMg01no421_a17.b1 CHROMAT_FILE:
MSMg01no421_a17.b1 PHD_FILE: MSMg01no421_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:04 2005
(577 letters)
>mm_chr2_99538814_99539786
Length = 973
Score = 975 bits (504), Expect = 0.0
Identities = 557/576 (96%), Gaps = 6/576 (1%)
Strand = Plus / Plus
Query: 1 attattatataaataacatttacctttgcagataagatattttttggaaaaaaataaatg 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 attattatataaataacatttacctttgcagataagatattttttg--aaaaaataaatg 258
Query: 61 tttctgtaaaatacatgtagatttttttttttagtttagcacaaatatatcctgaaagaa 120
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttctgtaaaatacatgtaga--tttttttttagtttagcacaaatatatcctgaaagaa 316
Query: 121 tatccattttagtattgaccaaacttttaaaagaaattttcatgtaaatttatcaagcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tatccattttagtattgaccaaacttttaaaagaaattttcatgtaaatttatcaagcat 376
Query: 181 acatatgcaataatctttatttaatctggatggtagacaagaaactgtcctgtatgtatt 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acatatgcaataatcttgatttaatctggatggtagacaagaaactgtcctgtatgtatt 436
Query: 241 tcttgcaacttactaattttatactcactcaactattagtgataatttaaattatgagtt 300
|||||| ||||||||| || | |||||||||| |||||||||||||||||||||||||
Sbjct: 437 tcttgctacttactaaaagtagaatcactcaacttttagtgataatttaaattatgagtt 496
Query: 301 atagttaacattgtcattataatagcctagaatcattgaagttgcaatcatctagacatt 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atagttaatattgtcattataatagcctagaatcattgaagttgcaatcatctagacatt 556
Query: 361 tctgaaatgaattttacaaatagattgagattggaagatataccataaatgtaatgtgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tctgaaatgaattttacaaatagattgagattggaagatataccataaatgtaatgtgag 616
Query: 421 cagcaccattcccataggtaagatcttaggttacataaagaaaaagctgactgaacatca 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 617 cagcaccattcccataggtaagatcttaggttacataaagaaaaagctgactgaacatta 676
Query: 481 gactttctctctctctctctctctctctctctctctctctctctctctctctctctctct 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaatttctctctctctctctctctctctctctctctctctctctctctctctctctctct 736
Query: 541 ctctctctgtttatggactcataatgcactgtgatc 576
| ||||| |||||||||||| ||||||||||||||
Sbjct: 737 -t-tctctatttatggactcagaatgcactgtgatc 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 973
Length adjustment: 10
Effective length of query: 567
Effective length of database: 963
Effective search space: 546021
Effective search space used: 546021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_a17.g1 MSMg01no421_a17.g1 CHROMAT_FILE:
MSMg01no421_a17.g1 PHD_FILE: MSMg01no421_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:04 2005
(485 letters)
>mm_chr2_99683414_99684298
Length = 885
Score = 853 bits (441), Expect = 0.0
Identities = 481/511 (94%), Gaps = 26/511 (5%)
Strand = Plus / Minus
Query: 1 tgtatctcatacagaggtcattctgcttctgtctccatagtgttatatcatgcctgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgtatctcatacagaggtcattctgcttctgtctccatagtgttatatcatgcctgcctc 579
Query: 61 catatcataattttaaactaatttaaaaaaactatttatataaaattttaaagtaatttt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 578 catatcataattttaaactaattaaaaaaaactatttatataaaattttaaagtaatttt 519
Query: 121 tactatatgtgaattatattcagtagtgatttcacttactgaataaaataaagataaaat 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tactatatgtgaattatattaagtagtgatttcacttactgaataaaataaagataaaat 459
Query: 181 attgtctaatagatataacatctctagaattgtatccttattacattataaaaatgtggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 attgtctaatagatataacatctctagaattgtatccttattacattataaaaatgtggt 399
Query: 241 tcatattaaactaagaataagtatataatacattaagatctatccactttcttctggtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tcatattaaactaagaataagtatataatacattaagatctatccactttcttctggtta 339
Query: 301 gagaataggtacaa--------------------------cttcctccctgaacacaatc 334
|||||||||||||| ||||| ||||||||||||||
Sbjct: 338 gagaataggtacaactgtaggaaataatacttaagtcactcttcccccctgaacacaatc 279
Query: 335 cagttatattatttgttcttggaaatggattttgaatatgcctgtttgactaatcagatg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cagttatattatttgttcttggaaatggattttgaatatgcctgtttgactaatcagatg 219
Query: 395 atcattttcctatcctttattataaatgctgagtgtcaaagatatttagggacaggatat 454
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atcattttcctatccttgattataaatgctgagtgtcaaagatatttagggacaggatat 159
Query: 455 atttggctttctgtttgtttgtttgtttgtt 485
|||||||||||||||||||||||||||||||
Sbjct: 158 atttggctttctgtttgtttgtttgtttgtt 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
