BAC Information

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BAC

Clone NameMSMg01-421F11
Chromosome2 (Build37)
Map Location 124,153,470 - 124,289,233
singlet/doubletdoublet
Overlap genenone
Upstream gene4930517E11Rik, LOC100043360
Downstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421F11.T7 (MSMg01no421_f11.b1)MSMg01-421F11.TJ (MSMg01no421_f11.g1)
ACCAG515991AG515992
length796774
length of high quality
(start - end)		432 (70 - 501)119 (73 - 191)
definitionCHROMAT_FILE: MSMg01no421_f11.b1 PHD_FILE: MSMg01no421_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:29 2005CHROMAT_FILE: MSMg01no421_f11.g1 PHD_FILE: MSMg01no421_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,288,802 - 124,289,233)(124,153,470 - 124,153,588)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAA
TTCTTTTGGTCTTTCCAACTGATGCCTCTCAATCCACTGAGAAAGTAGAA
TACTGCTTACATGTTGCTTCCTGAGATTTTAGCATAAGGTTTTTACATTT
TTTGGAGTCAAGCAATGCTGGTTCATTTTTAGGATGCAATTCCCTAGGGG
CAGAGTCTGTCATATGAGATGTGGCTTCTCTCATAAAACTGAGCAGTGTC
CATTAAGGGTCAGAAAACATGAACTAAACCATGGTTGATTTGCTTGGATC
AATATTGTGTTTTTAAACTTAGTGGTCTTACTGTTTTTGCATGTTAGGAT
TTCCTAGAAAAACCACAGCACTTTTTTTTTTGTATTTTTTTTATATGTGT
GTATTGGAAAGCCCTGTTGCTTGTATGTGTATGTACTCTTCCTCTGTCTC
TGTCTCTCTCGCTCTGTTTGTGTGCATGCACGCGTGCGTGTGTGTGTGTG
TGCGTGTGTGTGTGCACATCGCGTAAGGCTTGCCTCCTTATGCTACCTCA
TACCATTGCCTTTTCCTTGAAGCTGATCTCCCCGTATTTGTCTTCCTTGA
CGTAATAAGCACCACAAACCTTTTTCGCATGTGTACCACTCTCGCCTCTC
TTATTCTCACCTCTTTTTTTTTCTTTTTTTATCTTCCTTATCCTCCTATT
TTTTCTTAATTCCTTGTCTTATTTAGTCTCTTGACTACCCTCTTTTGCTC
TCTTCTCTACCCCTATCCCCCTCTTGCACTTTACTTCGCCTTCCCG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCCACACTCACCTCTCTTTTGTTACATCTC
ATCTACTGGAAAACCTCAATCTACTCTACATAACAGAAAAGCCAGAAAGA
ATGTGCATTTGTGTGGGAAGGGAGAATGGAGTGGGGGGAGTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTCCCTCCCTTTCNCCNCNCNCCCNCNNCNNNCCNNNCN
NTTTTTTTTTCCCCCCCCCCTCTTCTTCTTTCTTTTCTTTCTTTTCTCTT
TTTTCCCCCCCTTTTCTTTTTTTTTTTCCTCCTCTCTCCCTTCCTCTTCT
CTCCTTTTTTTTCTTCCTCTCTCTTTCTTCTTCCTTCCTTCTTCTTTTCT
TCTTCCTCTCCTTTTTCCCTCTTTTTTTTCCTTTCTCCTCCCTTTTTCTC
TTTCCCTCTTCCTCTTTTCTTCTTCTCTCTCTTTCTTCCCCCTCCTTCCC
TCTCTTTTTTTTTTCTCTCCCCTTCCCCTTTTTTCCCCTTTCTTTTTTTT
TTTTTTTTTTCCCCCTTTTTCTCCTNNNTCCTCTCTCTTCTCCTCCTCTC
CCTCTCTTCTTTTCCCTTCTCTTCCCTTTCCCTTTTTCCTCCTCTTCTTC
CTTTCTTTTTTTCCTCTCTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_f11.b1 MSMg01no421_f11.b1 CHROMAT_FILE:
MSMg01no421_f11.b1 PHD_FILE: MSMg01no421_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:29 2005
         (432 letters)



>mm_chr2_124288639_124289470
          Length = 832

 Score =  812 bits (420), Expect = 0.0
 Identities = 429/432 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatgcctctcaatccactgagaaagtagaatactgcttacatgttgcttcctgagattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tgatgcctctcaatccactgagaaagtagaatactgcttacatgttgcttcctgagattt 536

                                                                       
Query: 61  tagcataaggtttttacattttttggagtcaagcaatgctggttcatttttaggatgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tagcataaggtttttacattttttggagtcaagcaatgctggttcatttttaggatgcaa 476

                                                                       
Query: 121 ttccctaggggcagagtctgtcatatgagatgtggcttctctcataaaactgagcagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttccctaggggcagagtctgtcatatgagatgtggcttctctcataaaactgagcagtgt 416

                                                                       
Query: 181 ccattaagggtcagaaaacatgaactaaaccatggttgatttgcttggatcaatattgtg 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ccagtaagggtcagaaaacatgaactaaaccatggttgatttgcttggatcaatattgtg 356

                                                                       
Query: 241 tttttaaacttagtggtcttactgtttttgcatgttaggatttcctagaaaaaccacagc 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tttttaaacttagtggtcatactgtttttgcatgttaggatttcctagaaaaaccacagc 296

                                                                       
Query: 301 acttttttttttgtattttttttatatgtgtgtattggaaagccctgttgcttgtatgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 acttttttttttgtattttttttatatgtgtgtattggaaagccctgttgcttgtatgtg 236

                                                                       
Query: 361 tatgtactcttcctctgtctctgtctctctcgctctgtttgtgtgcatgcacgcgtgcgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tatgtactcttcctctgtctctgtctctctcgctctgtttgtgtgcatgcacgcgtgcgt 176

                       
Query: 421 gtgtgtgtgtgt 432
           | ||||||||||
Sbjct: 175 gcgtgtgtgtgt 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no421_f11.g1 MSMg01no421_f11.g1 CHROMAT_FILE:
MSMg01no421_f11.g1 PHD_FILE: MSMg01no421_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:29 2005
         (119 letters)



>mm_chr2_124153270_124153788
          Length = 519

 Score =  223 bits (115), Expect = 4e-63
 Identities = 118/119 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacactcacctctcttttgttacatctcatctactggaaaacctcaatctactctacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacactcacctctcttttgttacatctcatctactggaaaacctcaatctactctacata 260

                                                                      
Query: 61  acagaaaagccagaaagaatgtgcatttgtgtgggaagggagaatggagtggggggagt 119
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 acagaaaagccagaaagaatgtgcatttgcgtgggaagggagaatggagtggggggagt 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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