BAC Information

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BAC

Clone NameMSMg01-421G03
Chromosome2 (Build37)
Map Location 40,713,805 - 40,714,190
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421G03.T7 (MSMg01no421_g03.b1)MSMg01-421G03.TJ (MSMg01no421_g03.g1)
ACCAG516023AG516024
length814777
length of high quality
(start - end)
84 (71 - 154)387 (73 - 459)
definitionCHROMAT_FILE: MSMg01no421_g03.b1 PHD_FILE: MSMg01no421_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:32 2005CHROMAT_FILE: MSMg01no421_g03.g1 PHD_FILE: MSMg01no421_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGACCCCGCGGAATTCT
CATTGAGTTTCGACATACATAGACTTTGTAGATATTCAGGAGGAGGAGAC
TGGATGGAGGATAGATTGCGATAGGAACAGGGGAGATCAGGTTGGGGGAA
GAAGGACGTAGTTACGTTTTTCCTTCTTTTTCCCCCCCTCTCCCTCCCCT
CCCGCTCCCCCCCTCTTCCCGTTCTTTCGTTTTTTTCGCTCCCCCGCTCT
TTTTTCTCCCCCCCGCCTTTCCTTTTCCCCTTTCTCCGTTCTTTTCTCTC
TTCCCCCCCCCCCCAACTTTCCCTCCTTTCCCGGCACCCACGCTACCTTC
TCGCTCTCCGTTTTTTTCCCCCCCCCCCCCCCCTCTGCTCTTTTTTTTCC
CCCTTTCCCCTTCCCTTTCCCTCTCCTCTCCTTCTCTTCTTCCTCTTTCC
CCTCCCCCTCCTTCTCTTCTCTTCTCCTCGTCTCTTTTTCCCTCCTTTCT
CCTCCTTTTCCTCTTTTTTCCCCCTTTCCTTCCCCTTTCCCCGCTTTTTC
TCCTCTTCCTCATCCTTTTCTTCCCCTTCCCTCTCCCTTCTCTTTCCTCT
CGCTTTCCCCCCCCCCTTCCCCCCCCTCTCTTTCCGCGCTCCCTGTCTCC
TCCTTTCTCTTTCTTTTCTCTCTCTTCCCCCCCCTCTTTTTTTTCTTTTT
CCTCCCTTCCCTTCCCCCCCCCCCTCTTTCCGTCCTCTTCTCCTTCCTCC
CCTCCCCCCTCCTTTCTCTCCCCCCTTCTTCCTCTCTTTCTCTTTCTCTT
TTTTCCCTCCTCCG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTATCTCAATTAAAATCAAGAAACAAT
TGCTTGATTCTTATTGAAGCTATTTATATTGTTAATTTTCTAAATTCTTA
TTTTGTTAGGTAGTGCATAACACTGCTGTCCCCAATGCACTTGCTGTTGA
TTGGATTGGCAAAAACCTTTATTGGTCTGACACAGAGAAAAGGATAATTG
AAGTATCCAAACTCAATGGCTTATACCCTACTGTACTTGTTAGCAAAAGG
CTGAAGTTTCCCAGGGACCTGTCTTTATATCCACGAGCCGGGTTTGTAAA
ACTGTTAAAAATCCTAAATCTTTAGACTACTCTCATTGTGACAACTCTCT
GTGTTATTACAATGTAAATTAAAGTAATATATGAATGTAAAGAACTTTTT
TTTACAATCAAGGTTAGTAAGTATGGTCATAGCAGTCAGAGTGATGAATT
TAGAATCCATTTAAAATATCTGCTTTCTAAATATATAACAAAGATTCCTT
TTCCAAGAAGTCAATGAAATGAACACTACACATAGACTTATCTGATGTTG
GGTGCCTCGAACTGTTACAAAGGTAATAAGAATACCCTGAAAGCGTCCAC
TTGCGCCTCTCTTGTATGAATATAAAGCCTACCCCTTATAGCTAGTTTCC
TATTATTTGCCGCCCTATTTTCTTCCAAATTAAATTCGATTCCCCCTGAG
GTATATTTAATTACCCTTCGCTAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_g03.g1 MSMg01no421_g03.g1 CHROMAT_FILE:
MSMg01no421_g03.g1 PHD_FILE: MSMg01no421_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:32 2005
         (387 letters)



>mm_chr2_40713605_40714390
          Length = 786

 Score =  733 bits (379), Expect = 0.0
 Identities = 385/387 (99%), Gaps = 1/387 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtatctcaattaaaatcaagaaacaattgcttgattcttattgaagctatttatattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tgtatctcaattaaaatcaagaaacaattgcttgattcttattgaagctatttatattgt 527

                                                                       
Query: 61  taattttctaaattcttattttgttaggtagtgcataacactgctgtccccaatgcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 taattttctaaattcttattttgttaggtagtgcataacactgctgtccccaatgcactt 467

                                                                       
Query: 121 gctgttgattggattggcaaaaacctttattggtctgacacagagaaaaggataattgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gctgttgattggattggcaaaaacctttattggtctgacacagagaaaaggataattgaa 407

                                                                       
Query: 181 gtatccaaactcaatggcttataccctactgtacttgttagcaaaaggctgaagtttccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtatccaaactcaatggcttataccctactgtacttgttagcaaaaggctgaagtttccc 347

                                                                       
Query: 241 agggacctgtctttatatccacgagccgggtttgtaaaactgttaaaaatcctaaatctt 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agggacctgtctttagatccacgagccgggtttgtaaaactgttaaaaatcctaaatctt 287

                                                                       
Query: 301 tagactactctcattgtgacaactctctgtgttattacaatgtaaattaaagtaatatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tagactactctcattgtgacaactctctgtgttattacaatgtaaattaaagtaatatat 227

                                      
Query: 361 gaatgtaaagaacttttttttacaatc 387
           ||||||||||||| |||||||||||||
Sbjct: 226 gaatgtaaagaac-tttttttacaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 786
Length adjustment: 9
Effective length of query: 378
Effective length of database: 777
Effective search space:   293706
Effective search space used:   293706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)