Query= MSMg01no421_g22.b1 MSMg01no421_g22.b1 CHROMAT_FILE:
MSMg01no421_g22.b1 PHD_FILE: MSMg01no421_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:36 2005
(521 letters)
>mm_chr2_139703592_139704509
Length = 918
Score = 857 bits (443), Expect = 0.0
Identities = 496/517 (95%), Gaps = 8/517 (1%)
Strand = Plus / Plus
Query: 5 gaattctctttctaatctcgaaaaaaaaaaaaaaaaaaaaaaagagcacttggccaccct 64
||||||||||||||| | ||||||||||||||||||| |||||||||||||||||
Sbjct: 210 gaattctctttctaaacaggaaaaaaaaaaaaaaaaaa-----gagcacttggccaccct 264
Query: 65 attaaaatacatacacagacacaaacacatagatccaggcacacacagatacacacagac 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 attaaaatacatacacagacacaaacacatagatccaggcacatacagatacacacagac 324
Query: 125 acataggcaaacagacgggcagatagacacacacatatacatgcaacccacagatatata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acataggcaaacagacgggcagatagacacacacatatacatgcaacccacagatatata 384
Query: 185 ataaacagacacacacgcacacgcacacgcacacatacattcttccaattgtcgttaaca 244
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 385 ataaacagacacacacgcacacgcacacatacacatatattcttccaattgtcgttaaca 444
Query: 245 gtgcccagctgccctggctcctgcaaccacttaaaacctctgcacttggctttatgtccc 304
|| |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||
Sbjct: 445 gtccccagctgccctggctcccgcaaccacctaaaacctctccacttggctttatgtccc 504
Query: 305 aatttcttggaggaaaacagaactctaaaatcagatccgtcgatccggctgggcagttgc 364
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 505 aatttcttggaggaaaacagaactctaaaatcagatccgtct-t--ggctgggcagttgc 561
Query: 365 caagtcagctgctgctccttagacttccttgggtgggacgacatactacaggatgctctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 562 caagtcagctgctgctccttagacttccttgggtgggacgacatactacaggatgctttg 621
Query: 425 cacaccatataagtaactccttactgaataaagaaaaattcattttcagtgggaagaatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cacaccatataagtaactccttactgaataaagaaaaattcattttcagtgggaagaatg 681
Query: 485 agcaactgtaaatacaaccacctcctcttatctgcac 521
|||||||||||||||||||||||||||||||||||||
Sbjct: 682 agcaactgtaaatacaaccacctcctcttatctgcac 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 918
Length adjustment: 10
Effective length of query: 511
Effective length of database: 908
Effective search space: 463988
Effective search space used: 463988
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_g22.g1 MSMg01no421_g22.g1 CHROMAT_FILE:
MSMg01no421_g22.g1 PHD_FILE: MSMg01no421_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:36 2005
(430 letters)
>mm_chr2_139882576_139883404
Length = 829
Score = 758 bits (392), Expect = 0.0
Identities = 404/408 (99%), Gaps = 1/408 (0%)
Strand = Plus / Minus
Query: 1 tggagaaggactgccttccagatcatctcaggcatctgctgctaaagtaacaatcaagga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 566 tggagaaggactgccttccagatcatctcaggcatctgctgctaaagtaacagtcaagga 507
Query: 61 gttagaaacacagcagccctgtaaggagaaacgagggggctttgtgctggtgcatgcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gttagaaacacagcagccctgtaaggagaaacgagggggctttgtgctggtgcatgcagg 447
Query: 121 taaggctttgcaggtgaggtgggatagaaagggaaataacattttccttttcttgctttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taaggctttgcaggtgaggtgggatagaaagggaaataacattttccttttcttgctttg 387
Query: 181 aacaacactgaggactgcactttgtgtctgccagaggagtctgttagctattaatggagt 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aacaacactgaggactgcac-ttgtgtctgccagaggagtctgttagctattaatggagt 328
Query: 241 gaaggccttctctacaccctgcttggaaagttttacaatgagacttcttccaatgtcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaaggccttctctacaccctgcttggaaagttttacaatgagacttcttccaatgtcttc 268
Query: 301 cttatttccctttaccttacatacacaacatacaaatggctagttcagtatgtaaaaacc 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 267 cttatttccctttaccttacatacacaacatacatatggctagttcagtatgtaaaaacc 208
Query: 361 aaagtaatatttatttatttatttatttatttatttatttatttattt 408
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aaagtaatctttatttatttatttatttatttatttatttatttattt 160
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 829
Length adjustment: 9
Effective length of query: 421
Effective length of database: 820
Effective search space: 345220
Effective search space used: 345220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
